Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1376g00003 ATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGTGCCTCTGCAACTGATCATGGCGAGTTAACTCTGAAGGGCAGTGGTGGCAAGAGAGGCTTCTCTGAAACTGCTTCTGTTGATTTAAAGCTCAATCTTTCTTCCAATAACGACTCTGCCTCGGTGTCACCGGCTACAGAGAACCCCAAAGAGAAAACTACAGCAGTTGAACCTCCTCCTCGGGCTAACGACCCAGCAAAGCCACCTGCAAAGGCACAGGTGGTGGGTTGGCCACCAGTGAGATCATTCAGGAAGAACATAGTGAATGTTCATCAAAGGAGCAGTGGCAATGAAGAGGGTGAGAAGAGTGGTGGAGGAGCAGCGTTTGTGAAGGTGAGCATGGATGGTGCACCGTATCTACGGAAGGTGGACATAAGGTTGTACAAGAGCTACCAAGAGCTGTCAGAAGCGCTGGCCAAGATGTTCAGTTCCTTTACAATTCAGAAGTGTGGGTCCCAGGGGACCAAATTGATAGACCTTTTGAATGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTTCCCTGGGAAATGTTCGTTCAAACATGCAAGCGCCTCCGCATAATGAAGGCTTCTGAAGCAATTGGCCTCGCGCCAAGAGCCGTGGACAAGTGCAAGAGCAGAAGCTGA 699 0.5036 MINFEETELRLGLPGASATDHGELTLKGSGGKRGFSETASVDLKLNLSSNNDSASVSPATENPKEKTTAVEPPPRANDPAKPPAKAQVVGWPPVRSFRKNIVNVHQRSSGNEEGEKSGGGAAFVKVSMDGAPYLRKVDIRLYKSYQELSEALAKMFSSFTIQKCGSQGTKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQTCKRLRIMKASEAIGLAPRAVDKCKSRS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1376g00003 232 Pfam AUX/IAA family 6 223 IPR033389 -
Vium1376g00003 232 SUPERFAMILY CAD & PB1 domains 119 213 - -
Vium1376g00003 232 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 219 IPR003311 GO:0005634|GO:0006355
Vium1376g00003 232 Gene3D - 116 226 - -
Vium1376g00003 232 ProSiteProfiles PB1 domain profile. 121 214 IPR000270 GO:0005515
Vium1376g00003 232 MobiDBLite consensus disorder prediction 41 64 - -
Vium1376g00003 232 MobiDBLite consensus disorder prediction 13 88 - -
Vium1376g00003 232 FunFam Auxin-responsive protein 116 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1376g00003 Vium-Chr1376 32560 34953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1376g00003 111 217 B3 DNA Binding Superfamily AT1G19220 33.621 1.08e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium1376g00003 AUX_IAA 2e-79 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1376g00003 K14484 - gmx:100781847 352.443