Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1376g00001 ATGGATAGGGTGTTCTCCTCAGTCGACGAAATCTCCGATCACTTCTGGCCATCGCCGCCGATCCCCGTCTCCGCCGCCGATGAGGCCTCTAAGATGAGCCGTAGCGCCTCCGAGTGGGCCTTCCAACGCTTCATCCAGGAAGCTTCAGCACCCTCTCCCCCCTCTCCTTCCTCCGCCACCAGGGCTACTTCTGCGGCCGCCACTGACGTTGTCTTTGTCGAGATCGACGATCATCCCAAACCTGCCCCTGCTCCTCCCCAGAACGCCGCCGTTTTGCCCAATGCCCCTGTTCCCGTACCCCTTGACTCCGATGAGTACCAGGCCTTCCTCAAGAGCAAGCTCAACCTTGCATGCGCTGCTGTTGCCATGACTAGGGCATCTTTGGCTAAATCTCAAGAGCCAGCCCCTTTTTCTGATGGTGGATCACAGCCTATCGATCCTTCTCAAGTTGGATCTCAGACTACATCTAAAGGATCTATTCCTTCTGGAAATGATCCATCTAAGTTACAAGATAAAGATACGAAAGTACCAGTTGGGATGCCTTCCATACCTTCCACGCAAAAGAAACCTGTTGTTGCAGTTAGACCATCAACAAGTGGATCATCAAGAGAACTGTCAGATGATGATGATGCTGAGGGAGAGACATCTATGAACGACATGGACCCAGCTGATGCAAAAAGAGTAAGGAGGATGCTATCCAATAGGGAGTCTGCCCGGCGCTCTAGAAGAAGAAAGCAGGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTGAAGCGCCTTACTGATGTAAGTCAGAAATACAGTGAATCTGCTGTTGACAACAGAGTTTTAAAAGCTGATGTGGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACCGGGTTGAACCCAATGGTTCATGCCATGTCTGACATGTCATCATTGGGCATGACGTTATTTGATGGAAGAAGCCCTTCAGACACTTCAGCAGATGCAGCTGTTCCTGTGCAAGATGATCATCATCACTTCTATCAACCCACATCTAATAATCCTATTCCCAGTCATGATCCGATAGTCAACGATGGGTTGGCGGGCATGTCTTCAATTGAAAATGTGCAGCAGAACCCTGCAGCAGTGGCAGGTGGGAACAAGATGGGTCAAACTTCTTCCCTGCAGCGGGTGGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGTGGATTCCTGTGGACCTCCCTCTAATGGGGAGCAGTAA 1287 0.4965 MDRVFSSVDEISDHFWPSPPIPVSAADEASKMSRSASEWAFQRFIQEASAPSPPSPSSATRATSAAATDVVFVEIDDHPKPAPAPPQNAAVLPNAPVPVPLDSDEYQAFLKSKLNLACAAVAMTRASLAKSQEPAPFSDGGSQPIDPSQVGSQTTSKGSIPSGNDPSKLQDKDTKVPVGMPSIPSTQKKPVVAVRPSTSGSSRELSDDDDAEGETSMNDMDPADAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMVHAMSDMSSLGMTLFDGRSPSDTSADAAVPVQDDHHHFYQPTSNNPIPSHDPIVNDGLAGMSSIENVQQNPAAVAGGNKMGQTSSLQRVASLEHLQKRIRGGVDSCGPPSNGEQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1376g00001 428 MobiDBLite consensus disorder prediction 74 98 - -
Vium1376g00001 428 CDD bZIP_plant_GBF1 227 278 IPR045314 GO:0003700|GO:0006355
Vium1376g00001 428 PANTHER BASIC LEUCINE ZIPPER 63 1 418 - -
Vium1376g00001 428 MobiDBLite consensus disorder prediction 127 226 - -
Vium1376g00001 428 MobiDBLite consensus disorder prediction 1 29 - -
Vium1376g00001 428 FunFam BZIP transcription factor 224 275 - -
Vium1376g00001 428 Coils Coil 242 269 - -
Vium1376g00001 428 Gene3D - 225 281 - -
Vium1376g00001 428 MobiDBLite consensus disorder prediction 233 252 - -
Vium1376g00001 428 Coils Coil 284 304 - -
Vium1376g00001 428 Pfam bZIP transcription factor 225 278 IPR004827 GO:0003700|GO:0006355
Vium1376g00001 428 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 229 244 IPR004827 GO:0003700|GO:0006355
Vium1376g00001 428 Pfam Basic leucine-zipper C terminal 293 417 IPR020983 -
Vium1376g00001 428 MobiDBLite consensus disorder prediction 136 167 - -
Vium1376g00001 428 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 224 279 IPR004827 GO:0003700|GO:0006355
Vium1376g00001 428 MobiDBLite consensus disorder prediction 79 93 - -
Vium1376g00001 428 SMART brlzneu 222 286 IPR004827 GO:0003700|GO:0006355
Vium1376g00001 428 SUPERFAMILY Leucine zipper domain 226 276 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1376g00001 Vium-Chr1376 4475 11172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1376g00001 1 315 bZIP Transcription Factor Family AT4G02640 39.645 1.97e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium1376g00001 bZIP_C 1.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1376g00001 K25784 - gmx:100170702 623.624