Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13766g00001 ATGCCAAACATCATGGAAGATCATCCACCTGGTTTTCGCTTTTTCCCGACAGAAGAAGAGCTTGTTGGCTTCTACCTACACAACAAGCTAGAAGCTTCAAGAAATAATGCTGCTGCTGTTACTGCTGCCATAGATAGAGTTATTCCAGTTGTTGATATCAATGCCCTGGAACCATGGAACCTCCCAACACTTGCGGGGGAGCTTTGCCGTGGGGATACAGAGCAATGGTTTTTCTTTTCGCCTGGGCAAGAGAGAGAAGCCAGAGGAGGGAGACCTAGCAGAACCACAGCTTCTGGGTACTGGAAAGCTACTGGTTCACCTGGCTATGTTTATTCTTCTGATAACAGAGTTATTGGGGTGAAGAAATCCATGGTGTTCTACAAAGGAAAAGCTCCTATGGGAAGAAAAACCAAATGGAAGATGAACGAGTACAGAGCCATCTCCAACCCCGTCACCCCTCAGTTGAGATGCGAGTTCAGCTTATATCGGGTGTATATCGTATCTGGAAGCTTTCGAGCATTTGATCGCCGTCCATCAGAGGCAGAAGGAGCAGAGTCACGTCTTCATCAAAGTTCATCTCAAGTTTCTCACTTGCTCCAACTTTCTCAGCTTTCTGAGCTTTCTCAGCTCCCAGAAGCTGGAGATTCAAGTAGCAGAAATTGGAACGAGGAACAGCTTCAAGAACCGTCATGGGAATTGGAATGGGAACACTTCAATTGGATGGTCTAA 729 0.4636 MPNIMEDHPPGFRFFPTEEELVGFYLHNKLEASRNNAAAVTAAIDRVIPVVDINALEPWNLPTLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTASGYWKATGSPGYVYSSDNRVIGVKKSMVFYKGKAPMGRKTKWKMNEYRAISNPVTPQLRCEFSLYRVYIVSGSFRAFDRRPSEAEGAESRLHQSSSQVSHLLQLSQLSELSQLPEAGDSSSRNWNEEQLQEPSWELEWEHFNWMV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13766g00001 242 Pfam No apical meristem (NAM) protein 9 145 IPR003441 GO:0003677|GO:0006355
Vium13766g00001 242 ProSiteProfiles NAC domain profile. 8 167 IPR003441 GO:0003677|GO:0006355
Vium13766g00001 242 Gene3D NAC domain 17 169 IPR036093 GO:0003677|GO:0006355
Vium13766g00001 242 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 202 - -
Vium13766g00001 242 SUPERFAMILY NAC domain 5 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13766g00001 Vium-Chr13766 164 1438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13766g00001 11 240 NAC Transcription Factor Family AT3G44350 53.306 2.64e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium13766g00001 NAM 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13766g00001 - - gmx:100781321 352.443