Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium136g00002 ATGTCTGAATTAGACGCTCAAATTCCCACTGCCTTCGATCCTTTTGCTGAGGCAAATGCTGATGACTCGGGTGCTGGGTCAAAGGAGTATGTGCATATTCGCGTACAGCAGCGAAATGGTAGAAAAAGCCTGACAACTGTTCAGGGATTGAAAAAAGAATTCAGCTATAACAAGATACTTAAAGACGTTAAGAAAGAGTTCTGTTGCAATGGCACCGTTGTTCAGGACCCAGAACTAGGACAGGTTATTCAACTTCAAGGTGATCAGCGGAAGAATGTTTCGACCTTTCTAGTCCAGGCTGGTATTGTGAAGAAGGAGCATATCAAGATTCATGGTTTCTGA 342 0.4327 MSELDAQIPTAFDPFAEANADDSGAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDVKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium136g00002 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Vium136g00002 113 Gene3D - 2 113 - -
Vium136g00002 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 113 - -
Vium136g00002 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
Vium136g00002 113 NCBIfam translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Vium136g00002 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Vium136g00002 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Vium136g00002 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Vium136g00002 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
Vium136g00002 113 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium136g00002 Vium-Chr136 17605 20710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium136g00002 1 113 Eukaryotic Initiation Factors Gene Family AT4G27130 89.381 3.55e-75 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium136g00002 K03113 - pcin:129312453 226.098