Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00018 ATGGAGAGAGATATGTATATCGCTCCACTGGAGATTTCTGGTCGAGGTGCTACAGTAATAGATGAAATATCCCAGCATCCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCATATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCTACAAGTAATGTCCATGCTGATGCTTGCTTCATTAGTCCATCAACTATTGCTGACTCCACTCCATTAGTTACATCACGGAGAAAGACTATTGTGGGAGATGCCTCAAATCCCATGGCGAACTCTGAGTTTCAAGAGCATTTAGTTGGAGGAGTGCCCCTCACTCCTGCTTCGCTTGCTGCCATTCTTGCTGATAGAATTGGTCTTGAAGAAAATTTGGAGAATTCAGCCGCCGCCCTAGCTCCCTCAATCTTTTCCACGGGGGCACTAGAGGTATTCTTCAACAATTTGCATGGTACTTCAAACCCTTGGTTTGGAACTTTTGAGGAGTGTGCTTACAATGAAATTCCTAGTAAGTGGAATGCTAACAAATTTCCTAAAGCTCCAGAGAATGATGGAACTTGTCAGCCCTATTCTTCTGTGGCAAACCTGGATCCAAATGTATGGGCTACATCAAACGTTGCAAACATGGCCAACTATGCTCACTATTCCTCTAATTTTAGTAAAGAACTTTCTCTGAGTCTTGCAACATCTACAGCCGCAGGACAGTGCTCAGACGTGACTTGCTCTAATATGACCCCGTGCATGAATGGAACCATTTCCTGCAGCAGTAGTAGGGAAATTTCTATGAATTTGGGTGGTAATAAACATGCACAAATTTCACCAGAAGTACTGGAATCGAGATACCTTCTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTCAAAATCTGGAACAGTTAAACTATTCAGCCCCTGGTAATAGAGCAGGTGGACACAAGTCAACTTCAGCGTTTCCACCCAAGAGAAACATCTTGACAGATCACAATGCAAGTTCTGTTTACGAATCTCATGCAGAGTCTCCTTTGCAAAGGCAGGCTGCTGAATCTAAGAAAGCTCAACTGCTGGCACTTCTACAACTGGTGGACAGTCGATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCATGCAGCTACCGAGCTGGACCCACAGATACATGCACATTTTGCTCTTCAAACCATCTCTGTCCTTTACAAGGACTTACGGGAGAGGATTAGCAACTACATTCTTGCCATGGGATCAAGTTTCAAAAAATCGTGCACGGAAGACAGTGAATGGTCTATTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCGGAAAGATCTGTCTCGGTTCTACGGGCATGGATGTTTCAGAATTTCCTACACCCGTATCCGAAAGATGCAGAGAAGCATTTACTGGCAGTGAAAAGTGGGTTGACTAGAAGTCAGGTATCCAACTGGTTTATAAATGCTCGTGTGCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCCTGTCGAAATGAAGAAGAAATCCAGAATAACCATGGGAACAGGATAAGCATGAGTAATCAAAGGTTTAATGTTAACTAA 1689 0.4316 MERDMYIAPLEISGRGATVIDEISQHPTSNPLIQCYSLDLNNQSHIINGISMLSGEQGEPTSNVHADACFISPSTIADSTPLVTSRRKTIVGDASNPMANSEFQEHLVGGVPLTPASLAAILADRIGLEENLENSAAALAPSIFSTGALEVFFNNLHGTSNPWFGTFEECAYNEIPSKWNANKFPKAPENDGTCQPYSSVANLDPNVWATSNVANMANYAHYSSNFSKELSLSLATSTAAGQCSDVTCSNMTPCMNGTISCSSSREISMNLGGNKHAQISPEVLESRYLLGIQEILAQIARYSFQNLEQLNYSAPGNRAGGHKSTSAFPPKRNILTDHNASSVYESHAESPLQRQAAESKKAQLLALLQLVDSRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISVLYKDLRERISNYILAMGSSFKKSCTEDSEWSIETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEEIQNNHGNRISMSNQRFNVN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00018 562 Pfam Associated with HOX 283 420 IPR006563 -
Vium1368g00018 562 CDD homeodomain 463 524 IPR001356 GO:0003677
Vium1368g00018 562 SMART prehox3 277 421 IPR006563 -
Vium1368g00018 562 SMART HOX_1 463 527 IPR001356 GO:0003677
Vium1368g00018 562 Gene3D - 466 546 - -
Vium1368g00018 562 ProSiteProfiles 'Homeobox' domain profile. 460 523 IPR001356 GO:0003677
Vium1368g00018 562 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 212 545 - -
Vium1368g00018 562 Pfam Homeobox KN domain 480 519 IPR008422 GO:0003677|GO:0006355
Vium1368g00018 562 SUPERFAMILY Homeodomain-like 465 532 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00018 Vium-Chr1368 172206 174624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1368g00018 229 547 Homeobox Transcription Factor Family AT4G32980 55.590 3.11e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium1368g00018 POX 4.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1368g00018 - - gmx:100820354 913.294