Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00017 ATGGAGAGAGATATGTATATCGCTCCACTGGAGATTTCTGGTCGAGGTGCTACAGTAATAGATGAAATATCCCAGCATCCCACCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCATATCATAAATGGAATTTCAATGCTTTCTGGAGAGCAAGTTACATCACGGAGAAAGACTATTGTGGGAGATGCCTCAAATCCCATGGCGAACTCTGAGTTTCAAGAGCATTTAGTTGGAGGAGTGCCCCTCACTCCTGCTTCGCTTGCTGCCATTCTTGCTGATAGAATTGGTCTTGAAGAAAATTTGGAGAATTCAGCCGCCGCCCTAGCTCCCTCAATCTTTTCCACGGGGGCACTAGAGGTATTCTTCAACAATTTGCATGGTACTTCAAACCCTTGGTTTGGAACTTTTGAGGAGTGTGCTTACAATGAAATTCCTAGTAAGTGGAATGCTAACAAATTTCCTAAAGCTCCAGAGAATGATGGAACTTGTCAGCCCTATTCTTCTGTGGCAAACCTGGATCCAAATGTATGGGCTACATCAAACGTTGCAAACATGGCCAACTATGCTCACTATTCCTCTAATTTTAGTAAAGAACTTTCTCTGAGTCTTGCAACATCTACAGCCGCAGGACAGTGCTCAGACGTGACTTGCTCTAATATGACCCCGTGCATGAATGGAACCATTTCCTGCAGCAGTAGTAGGGAAATTTCTATGAATTTGGGTGGTAATAAACATGCACAAATTTCACCAGAAGTACTGGAATCGAGATACCTTCTTGGGATTCAAGAGATACTTGCTCAAATTGCAAGATATTCATTTCAAAATCTGGAACAGTTAAACTATTCAGCCCCTGGTAATAGAGCAGGTGGACACAAGTCAACTTCAGCGTTTCCACCCAAGAGAAACATCTTGACAGATCACAATGCAAGTTCTGTTTACGAATCTCATGCAGAGTCTCCTTTGCAAAGGCAGGCTGCTGAATCTAAGAAAGCTCAACTGCTGGCACTTCTACAACTGGTGGACAGTCGATACAGCCAGTGTTTGGATGAGATACATACTGTTGTATCTGCATTCCATGCAGCTACCGAGCTGGACCCACAGATACATGCACATTTTGCTCTTCAAACCATCTCTGTCCTTTACAAGGACTTACGGGAGAGGATTAGCAACTACATTCTTGCCATGGGATCAAGTTTCAAAAAATCGTGCACGGAAGACAGTGAATGGTCTATTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGCTGTGGAGGCCCCAGAGAGGCTTGCCGGAAAGATCTGTCTCGGTTCTACGGGCATGGATGTTTCAGAATTTCCTACACCCGTATCCGAAAGATGCAGAGAAGCATTTACTGGCAGTGAAAAGTGGGTTGACTAGAAGTCAGGTATCCAACTGGTTTATAAATGCTCGTGTGCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAACAAAAGAAAGGCCTGTCGAAATGAAGAAGAAATCCAGAATAACCATGGGAACAGGATAAGCATGAGTAATCAAAGGTTTAATGTTAACTAA 1614 0.4318 MERDMYIAPLEISGRGATVIDEISQHPTSNPLIQCYSLDLNNQSHIINGISMLSGEQVTSRRKTIVGDASNPMANSEFQEHLVGGVPLTPASLAAILADRIGLEENLENSAAALAPSIFSTGALEVFFNNLHGTSNPWFGTFEECAYNEIPSKWNANKFPKAPENDGTCQPYSSVANLDPNVWATSNVANMANYAHYSSNFSKELSLSLATSTAAGQCSDVTCSNMTPCMNGTISCSSSREISMNLGGNKHAQISPEVLESRYLLGIQEILAQIARYSFQNLEQLNYSAPGNRAGGHKSTSAFPPKRNILTDHNASSVYESHAESPLQRQAAESKKAQLLALLQLVDSRYSQCLDEIHTVVSAFHAATELDPQIHAHFALQTISVLYKDLRERISNYILAMGSSFKKSCTEDSEWSIETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEEIQNNHGNRISMSNQRFNVN 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00017 537 ProSiteProfiles 'Homeobox' domain profile. 435 498 IPR001356 GO:0003677
Vium1368g00017 537 Pfam Homeobox KN domain 455 494 IPR008422 GO:0003677|GO:0006355
Vium1368g00017 537 SMART prehox3 252 396 IPR006563 -
Vium1368g00017 537 SMART HOX_1 438 502 IPR001356 GO:0003677
Vium1368g00017 537 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 188 520 - -
Vium1368g00017 537 Pfam Associated with HOX 258 395 IPR006563 -
Vium1368g00017 537 CDD homeodomain 438 499 IPR001356 GO:0003677
Vium1368g00017 537 Gene3D - 441 521 - -
Vium1368g00017 537 SUPERFAMILY Homeodomain-like 440 507 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00017 Vium-Chr1368 172205 174624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1368g00017 204 522 Homeobox Transcription Factor Family AT4G32980 55.590 1.39e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vium1368g00017 POX 3.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1368g00017 - - gmx:100820354 858.596