Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00014 ATGGGAATAGCCAGAAAATGTTCATACTGTGGCAAATTAGGTCACAATTCAAGGACTTGTAAAAGTCCTCTCGGTCATGGAAACCTGAAGCTCTTTGGAGTGCAGCTTGACATTTCTTCTTCTTCTTCATCTTCTACTATTTCTTTCTCTTCACCTTCGTATTCTGCCTTGACCAACCACTTCTTCTCTTCATCTCCTTCTTTTCGTGATGAAAATCAAAATTCAGATGCTTTCTTACTCACTGCCAATACCCTCCTATCGAGAATTCAAGACACAAAAAAAGGTGTGGCATGGACAGAGGAGGAACACAAGGTGTTTCTCTTAGGGCTACAGAAGCTGGGGAAGGGAAACTGGAGAGGCATATCGAAAAGTTTTGTCAAAACAAGAACACCTGTGCAAGTTGCAAGTCATGCACAGAAGTATTTTCTCCGACAATCTCACAATACCTTTCACAAAACAAAACACTCTCGTACCTTGTTCCATGTCCCTTCTTCTTCAACTTCCACTTCATCTTCATCTAATTGCACTGCTCAGATGCCACACCCAGATTTAGAACTCAAACTCGCAACTCCCATGCCATTGGAGCTATATCAGATGCATGATTTTTGA 609 0.4154 MGIARKCSYCGKLGHNSRTCKSPLGHGNLKLFGVQLDISSSSSSSTISFSSPSYSALTNHFFSSSPSFRDENQNSDAFLLTANTLLSRIQDTKKGVAWTEEEHKVFLLGLQKLGKGNWRGISKSFVKTRTPVQVASHAQKYFLRQSHNTFHKTKHSRTLFHVPSSSTSTSSSSNCTAQMPHPDLELKLATPMPLELYQMHDF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00014 202 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 145 IPR006447 GO:0003677
Vium1368g00014 202 CDD SANT 97 142 IPR001005 -
Vium1368g00014 202 Gene3D - 98 147 - -
Vium1368g00014 202 Pfam Myb-like DNA-binding domain 97 142 IPR001005 -
Vium1368g00014 202 ProSiteProfiles Myb-like domain profile. 90 142 IPR001005 -
Vium1368g00014 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 146 IPR017930 -
Vium1368g00014 202 FunFam transcription factor MYB1R1 96 147 - -
Vium1368g00014 202 SUPERFAMILY Retrovirus zinc finger-like domains 5 27 IPR036875 GO:0003676|GO:0008270
Vium1368g00014 202 PANTHER TRANSCRIPTION FACTOR KUA1 5 178 - -
Vium1368g00014 202 SMART sant 94 144 IPR001005 -
Vium1368g00014 202 SUPERFAMILY Homeodomain-like 92 146 IPR009057 -
Vium1368g00014 202 ProSiteProfiles Zinc finger CCHC-type profile. 5 22 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00014 Vium-Chr1368 149262 150937 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1368g00014 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1368g00014 - - pvu:PHAVU_009G077300g 281.182