Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00012 ATGCAGTTCATTTTCTCTCTCTTTCCTCCTTCCATGACTTCTGTTTCTCTGAACCTACCAGCTCCTACTATACAAGATCAAACTCATCTCTTCATTTCTCCTGATAATCACCAATCAACTCTCTCATGTTACTCCTTCTTCCACATATTAGACCAAAGCCAGGCCAAAGATATCAGATACTTCAGACATGCTGATCAAGAGGATGTGAAGTTTGTATTTCATGGTGGATCATCAGATAATCAGCAATTTACGTCGTCCACTCAACGTAATAAGTCGGTTATGGCGGATCCAAATAGCAGCGCGTGTGGCCACCTAGCAGAAGAGGAAATAGAGGAACAAGAGAACAGAAGAGGAAATTACGAGTATGAAAAATGGTTGTCTTCAAATGTGAGGTTGACGAGAAAAATGATGAGCCCACCTAGCAATAATTTAGCCACAAACAAAGCATTCGATATAATTAGGGTTTGTGCAGATTGTAACACAACCAGTACCCCACTCTGGAGGAGTGGTCCTAATGGTCCTAAGTCACTTTGCAATGCCTGTGGCATTCGGCAGAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCGAATAGTTGCATGGATGCAAAGTCTAGAGTTCGTCATCAGAAGGAAAAGAAGTGTCGTAGAAACCATTTTGCAGGGTTCAAGAATAAGTTCAAGACTGATAGAGGAACATTATCTGAGGAGCAGAAAGTGAGGATTCATTTGAAAGATTTTTCTGTAAGTTTAAGGGATGATTCAGCTTTGAAGCAAGAGTCTCCAATGGATGAAGTAGCTCAGGCAGCGATGCTTCTTATGGATTTATCTAGAGGCTTTCTTTACTAA 846 0.4161 MQFIFSLFPPSMTSVSLNLPAPTIQDQTHLFISPDNHQSTLSCYSFFHILDQSQAKDIRYFRHADQEDVKFVFHGGSSDNQQFTSSTQRNKSVMADPNSSACGHLAEEEIEEQENRRGNYEYEKWLSSNVRLTRKMMSPPSNNLATNKAFDIIRVCADCNTTSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANSCMDAKSRVRHQKEKKCRRNHFAGFKNKFKTDRGTLSEEQKVRIHLKDFSVSLRDDSALKQESPMDEVAQAAMLLMDLSRGFLY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00012 281 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 192 - -
Vium1368g00012 281 Gene3D - 153 217 IPR013088 GO:0006355|GO:0008270
Vium1368g00012 281 SMART GATA_3 150 203 IPR000679 GO:0006355|GO:0043565
Vium1368g00012 281 MobiDBLite consensus disorder prediction 80 97 - -
Vium1368g00012 281 CDD ZnF_GATA 155 192 IPR000679 GO:0006355|GO:0043565
Vium1368g00012 281 ProSiteProfiles GATA-type zinc finger domain profile. 154 186 IPR000679 GO:0006355|GO:0043565
Vium1368g00012 281 Pfam GATA zinc finger 156 189 IPR000679 GO:0006355|GO:0043565
Vium1368g00012 281 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 23 143 - -
Vium1368g00012 281 ProSitePatterns GATA-type zinc finger domain. 156 181 IPR000679 GO:0006355|GO:0043565
Vium1368g00012 281 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00012 Vium-Chr1368 137439 138631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1368g00012 142 281 C2C2-Gata Transcription Factor Family AT5G49300 38.571 4.04e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium1368g00012 GATA 4.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1368g00012 - - pvu:PHAVU_009G077500g 299.671