Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00011 ATGGTGATAGATTGTCACACTAACAATTGCTCCGGAAATGACATCGTTGATAGTGTGATCGTCAACCAGCTAATATGTTTTGGTGTAAAACCACTTAAAAATGGATTTGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTACGTGGTTCGCTCACCACATAGTTCACTGACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGAGTGACATTCATCAATGCTGTTCCCAAGACAGCTTCGGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 393 0.4097 MVIDCHTNNCSGNDIVDSVIVNQLICFGVKPLKNGFVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPHSSLTEEDVQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00011 130 Pfam AMP-binding enzyme C-terminal domain 41 116 IPR025110 -
Vium1368g00011 130 SUPERFAMILY Acetyl-CoA synthetase-like 37 128 - -
Vium1368g00011 130 Gene3D - 25 129 IPR045851 -
Vium1368g00011 130 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 35 125 - -
Vium1368g00011 130 FunFam 4-coumarate--CoA ligase 2 30 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00011 Vium-Chr1368 120458 121689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1368g00011 35 130 Monolignol Biosynthesis Gene Families AT4G05160 78.351 1.63e-48 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1368g00011 K01904 - vum:124826086 258.84