Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00006 ATGAGCGCAGAGGACGATGACTCAGAGGGAAAAAGATTGAAACTTCGGCAAGATGAGGTGTTCAATTGTGGTGTGAAGAATTTCCAGCGCGATCTGGTGGCTGGGGCGTTGATGGGCGGTGTGGTGCACACGATTGTTGCCCCAATTGAGAGGTCGAAGCTGTTGCTACAGACTCAGGAGAGCAATTTGGCCATTGTGGCGAGTGGGCGTCGCAGATTCAAGGGCATGTTTGATTGCATAGCCCGTACGGTCAGGGAAGAAGGCATTCTCTCTTTGTGGCGAGGTAATGGCAGCAGTGTTATTCGTTACTATCCTTCTGTGGCCCTCAATTTCTCTCTCAAGGATCTTTACAAAAGCATTTTAAGGGGTGGAAACTCTAGTGATAATAAACTTTTGACAGGTGCCACTGCAAATTTCGTGGCTGGTGCTGCAGCCGGTTGCACAACACTTGTACTGGTTTACCCCCTTGACATAGCACACACGCGCCTTGCTGCAGACATTGGAAGTACTGAAGTGCGCCAATTTCGAGGTATTTTCCATTTCTTGGCTACCATATTCCACAAGAATGGCATTCGCGGAATCTACAGGGGCCTTCCTGCATCTCTTCAAGGGATGGTGGTACACAGGGGCATATATTTTGGAGGTTTTGATACCATGAAAGAGATATTGTCTGAAAAATCAAAACCTGAGTTGGCGTTGTGGAAGCGTTGGGTAGTAGCTCAGGCAGTCACAACCTCTGCCGGATTGATATCTTATCCGTTAGACACGGTTCGTAGGAGGATGATGATGCAATCTGGCATGGAACAGCCAATGTATGACAGCACCCTTGACTGCTGGAGGAAGATGTACAGGACTGAAGGGCTGGCTTCATTTTACCGTGGTGCAGTTTCTAATATGTTTAGGAGCACAGGAGCAGCTGCTATCTTAGTGTTGTATGATGAGATTAAGAAATTTATGAACTGGGGAAGTTTCTACAGCACCAACGTTCGTTGA 993 0.4753 MSAEDDDSEGKRLKLRQDEVFNCGVKNFQRDLVAGALMGGVVHTIVAPIERSKLLLQTQESNLAIVASGRRRFKGMFDCIARTVREEGILSLWRGNGSSVIRYYPSVALNFSLKDLYKSILRGGNSSDNKLLTGATANFVAGAAAGCTTLVLVYPLDIAHTRLAADIGSTEVRQFRGIFHFLATIFHKNGIRGIYRGLPASLQGMVVHRGIYFGGFDTMKEILSEKSKPELALWKRWVVAQAVTTSAGLISYPLDTVRRRMMMQSGMEQPMYDSTLDCWRKMYRTEGLASFYRGAVSNMFRSTGAAAILVLYDEIKKFMNWGSFYSTNVR 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00006 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 318 IPR018108 -
Vium1368g00006 330 Pfam Mitochondrial carrier protein 135 226 IPR018108 -
Vium1368g00006 330 Pfam Mitochondrial carrier protein 232 320 IPR018108 -
Vium1368g00006 330 Pfam Mitochondrial carrier protein 27 122 IPR018108 -
Vium1368g00006 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 222 IPR018108 -
Vium1368g00006 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 120 IPR018108 -
Vium1368g00006 330 SUPERFAMILY Mitochondrial carrier 26 314 IPR023395 -
Vium1368g00006 330 PRINTS Mitochondrial carrier protein signature 44 58 IPR002067 GO:0055085
Vium1368g00006 330 PRINTS Mitochondrial carrier protein signature 31 44 IPR002067 GO:0055085
Vium1368g00006 330 PRINTS Mitochondrial carrier protein signature 195 213 IPR002067 GO:0055085
Vium1368g00006 330 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Vium1368g00006 330 PRINTS Mitochondrial carrier protein signature 95 115 IPR002067 GO:0055085
Vium1368g00006 330 PRINTS Mitochondrial carrier protein signature 240 262 IPR002067 GO:0055085
Vium1368g00006 330 PRINTS Adenine nucleotide translocator signature 236 252 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1368g00006 330 PRINTS Adenine nucleotide translocator signature 106 118 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1368g00006 330 PRINTS Adenine nucleotide translocator signature 73 94 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1368g00006 330 PRINTS Adenine nucleotide translocator signature 28 40 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1368g00006 330 PRINTS Adenine nucleotide translocator signature 133 146 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1368g00006 330 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 22 324 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium1368g00006 330 FunFam probable ADP,ATP carrier protein At5g56450 30 321 - -
Vium1368g00006 330 Gene3D Mitochondrial carrier domain 30 322 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00006 Vium-Chr1368 50287 59076 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1368g00006 26 321 Antiporters AT5G17400 38.487 3.90e-64 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1368g00006 K05863 - gmx:100797251 555.058