Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00004 ATGAAGGGAGGTACAGTGAAAGAGGAACAAACATTCGCATTTGCGGCTGCTGCTCCTGCTTCACCTTCATCCTCAACTTCCAACCTCTTCCCGCAACCAAGGGAAGGCTTGCACGATGTGGGTCCACCTCCGTTTCTCACCAAAACCTTCGACGTGGTCGAAGACCCTTCCACCAACGACATCGTTTCCTGGAGCAGAGCACGCAACAGTTTCGTCGTTTGGGACTCTCACAAGTTCTCCACCACCATCTTGCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCGTCCGACAACTCAACACCTATGGTTTTAGAAAAGTTGATCCTGACAAATGGGAATTTGCGAACGAAGGTTTTCTGGCGGGACAGAGGCACTTGTTGAAGACGATCAAGAGAAGGAGGCACGTAACACAGATGCAGTCACACGAGGGAGGAAGTGGAGCTTGCGTTGAATTGGGGGAGTTTGGATTGGAAGGTGAGATTGAGAGGTTGAGGAGAGACAGGACAGTTTTGATGGCTGAAATTGTGAAGTTGAGGCAACAACAGCACAATTCAAGGGAGCAATTGTTGTCCATGGAGAGCAGATTGCAAGTCAGCGAGAAGAAACATCAGCAGATGATGACTTTTCTAGCTAAGGCACTCAACAATCAGACTTTTATTCAGCAGTTCCTTCACAGGAACGCTCAGAAGATAGAGTTGCAAGGTGGTAGAAGAAAGAGGAGATTAACTGCTTCCCCAAGCGTGGAGAATTTGCAGCAAGATCCTGTGATTGATGCGGCATTGCCTGTTGAAGAAGAATCCACTAATATTGAGTCGCACATGGAGTCTCTTCTCTCAGCTGTTTGTGACGATGATCCATTAGAATCGAGCTCTGAATTAGAAGACCCGATTTTAGGTTCAGTTCCTACAACTGGTGGTGGTAGTGATTTGGGGGTGGTAAGTGATGCAATCTGGGAGGATTTACTGAACCAAGACTTGGTTGCTGCGAACCATGAGGAGGAAGTTGTGATTGGTGATTTTTCACAAGTTGATGTTCCTGTGGAGGATTTGGTTGCTGATCCTGATGAGTGGAGTGAGGATTTGCAGAACCTTGTGGATCATATGGGTTATCTTGCGTCCAAACCCTAG 1131 0.4721 MKGGTVKEEQTFAFAAAAPASPSSSTSNLFPQPREGLHDVGPPPFLTKTFDVVEDPSTNDIVSWSRARNSFVVWDSHKFSTTILPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLAGQRHLLKTIKRRRHVTQMQSHEGGSGACVELGEFGLEGEIERLRRDRTVLMAEIVKLRQQQHNSREQLLSMESRLQVSEKKHQQMMTFLAKALNNQTFIQQFLHRNAQKIELQGGRRKRRLTASPSVENLQQDPVIDAALPVEEESTNIESHMESLLSAVCDDDPLESSSELEDPILGSVPTTGGGSDLGVVSDAIWEDLLNQDLVAANHEEEVVIGDFSQVDVPVEDLVADPDEWSEDLQNLVDHMGYLASKP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00004 376 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 264 IPR027725 -
Vium1368g00004 376 Coils Coil 162 182 - -
Vium1368g00004 376 Gene3D - 38 135 IPR036388 -
Vium1368g00004 376 MobiDBLite consensus disorder prediction 17 32 - -
Vium1368g00004 376 MobiDBLite consensus disorder prediction 286 305 - -
Vium1368g00004 376 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Vium1368g00004 376 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1368g00004 376 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1368g00004 376 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1368g00004 376 FunFam Heat shock transcription factor 1 38 135 - -
Vium1368g00004 376 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1368g00004 376 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1368g00004 376 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium1368g00004 376 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00004 Vium-Chr1368 29931 31561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1368g00004 31 376 HSF AT2G26150 51.429 1.02e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium1368g00004 HSF_DNA-bind 1.9e-32 CL0123