Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00003 ATGGACTTGGCATGGTGGTTTCCACTTCCATGTCTCCTTTCTGCTTCAACAATGTTTACCTTGCTGGCTTTAACAGGAGGCTTGTTCGTATATCTGTATGCACCTTATTGGGGTGTAAGGAAGGTTCCAGCTCCACCTTCTTGGCCTCTTGTAGGACACCTTCCCTTGCTGGCTAAATATGGTCCCGATGTCTTCTCAGTCCTTGCCAAACAATACGGTCCCATTTACAGATTCCATATGGGGAGACAACCACTAATAATTATAGCAAATGCAGAGCTGTGCAAAGAAGCTGGAATTAAGAAATTCAAAGATATTTCAAACAGAAGTATTCCATCACCAATATCTGCTTCTCCTCTTCACCAGAAGGGTCTCTTCTTCAGCAGGGACTCACAATGGTCTACCATGCGAAACACTATACTATCGATCTACCAACCATCACACTTATCCGGATTAGTGCCACTGATGCAGTCTTTCATAGAATCTGCCACTGAAAACCTTGACTCTGAAAAAGAAGACATTGTTTTTTCCAACTTGTCCCTCAGACTTGCAACTGATGTGATTGGGCAGGCAGCATTTGGTGTGAACTTTGGTCTTTCTAGACCCAATTCAGTTTGTGATTCTATCAAGAGTGTTGACAGTGACCATGCAACTCCTGCTAATGACAATGAAGTATCCGATTTCATCAACCAGCACATATACTCCACTACACAACTCAAGATGGACTTGTCTGGTTCCTTCTCCATTATATTGGGTCTGCTTTTGCCAATACTTCAAGAGCCGTTTAGGCAGATTCTGAAGAGAATTCCAGGAACCATGGACTGGAAGATTGAGCGTACAAACCAAAAACTAAGTGGCCGTCTTGATGAGATTGTAGAAAAAAAAATGAAAGATAAGACCCCAAGTTCAAAGGATTTCTTGTCACTCATACTTAATGCCAGAGAAACAAAAGCAGTTTCAGAGAATGTCTTCACACCAGACTACATCAACGCAGTTACTTACGAGCATCTGCTTGCTGGTTCGGCAACCACCTCCTTTACCTTGTCTTCTGTTATCTATTTGGTTGCTGGACATCCTCAAGTTGAGAAAAAATTGCTTCATGAGATAGATGCCTTTGGTCCTGTTGATAAGATTCCGACTTCTCAAGATCTTCGTGACAACTTCCCTTATCTCGATCAGGTGATCAAAGAGGCAATGAGATTTTACACTGTATCTCCATTAGTTGCTAGAGAAACATCAAATGAAGTGGAGATTGGAGGCTATCTTCTCCCAAAGAGGACTTGGGTGTGGTTAGCACTTGGAGTTGTGGCAAAAGATCCCAAGGACTTTCCAGAGCCAGAAAAGTTCAAACCAGAGAGGTTTGACCCCAACTGTGAAGAAATGAAACGAAGGCATCCTTATGCTTTTATACCATTTGGAATTGGTCCTCGAGCATGCATTGGCAAACAATTTTCCCTACAAGAGATCAAGCTTTCTCTCATTCATTTATATCGGAAATACTTGTTTCGGCATTCACCAAATATGGAAAACCCCTTGGAACTCCAGTATGGGATAGTCCTCAACTTCAAGCATGGGGTCAAGCTCAGAGCCATAAAAAGAACACAAAGTTACTAA 1611 0.4221 MDLAWWFPLPCLLSASTMFTLLALTGGLFVYLYAPYWGVRKVPAPPSWPLVGHLPLLAKYGPDVFSVLAKQYGPIYRFHMGRQPLIIIANAELCKEAGIKKFKDISNRSIPSPISASPLHQKGLFFSRDSQWSTMRNTILSIYQPSHLSGLVPLMQSFIESATENLDSEKEDIVFSNLSLRLATDVIGQAAFGVNFGLSRPNSVCDSIKSVDSDHATPANDNEVSDFINQHIYSTTQLKMDLSGSFSIILGLLLPILQEPFRQILKRIPGTMDWKIERTNQKLSGRLDEIVEKKMKDKTPSSKDFLSLILNARETKAVSENVFTPDYINAVTYEHLLAGSATTSFTLSSVIYLVAGHPQVEKKLLHEIDAFGPVDKIPTSQDLRDNFPYLDQVIKEAMRFYTVSPLVARETSNEVEIGGYLLPKRTWVWLALGVVAKDPKDFPEPEKFKPERFDPNCEEMKRRHPYAFIPFGIGPRACIGKQFSLQEIKLSLIHLYRKYLFRHSPNMENPLELQYGIVLNFKHGVKLRAIKRTQSY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00003 536 PRINTS E-class P450 group I signature 347 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS E-class P450 group I signature 478 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS E-class P450 group I signature 468 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS E-class P450 group I signature 431 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS E-class P450 group I signature 391 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS E-class P450 group I signature 327 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 Gene3D Cytochrome P450 28 536 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 471 480 IPR017972 GO:0005506|GO:0016705
Vium1368g00003 536 PANTHER THROMBOXANE-A SYNTHASE 17 533 - -
Vium1368g00003 536 SUPERFAMILY Cytochrome P450 35 532 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 Pfam Cytochrome P450 43 519 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS P450 superfamily signature 478 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS P450 superfamily signature 392 403 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS P450 superfamily signature 469 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1368g00003 536 PRINTS P450 superfamily signature 338 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00003 Vium-Chr1368 16044 22869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1368g00003 80 532 Cytochrome P450 AT2G26170 73.731 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1368g00003 K20771 - gmx:100797803 934.48