Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1368g00002 ATGGGTGCATCAGGAAAATGGGTGAAGGCTTTAATCGGACTCAAGAAACCAGACAAGGACGAACATGTGAAAGAGGGTGGTAAGAGCAAGAAGTGGAGGCTATGGAGGAGTTCTTCTGGGGATGTGGGTTCTTGGAAGGCTATCAAAGGAAACCACCACAAAGCAGCTTCTGAAGGGTCTGATTCTCCACCTGTTGTAGCAGCAGATGCTTACACGGCCGCAGTAGCCGCTGTGGTTCGAGCACCACCTAAGGATTTCAGACTCGTCAAGCAAGAATGGGCCGCCATAAGAATCCAAACTGCCTTCCGTGCCTTCTTGGCAAGAAGGGCTTTGAGGGCATTGAAAGGAGTGGTGAGGATTCAAGCTCTTGTTCGGGGGAGACAGGTGAGGAAACAAGCTGCGGTGACACTTAGGTGTATGCAGGCCTTGGTTCGGGTTCAGGCCCGTGTAAGAGCTCGTCGTGTGAGAATGTCCATAGAGGGGCAAGCTGTGCAGAACATGCTTAATGAAAGGCGCAGTAAGCTTGAACTTTTGAAGCAAGCTGAGGAAGGATGGTGTGACAGCAGAGGAACTGTGGAAGATGTTAAAGCAAAGATTCAGATGAGGCAAGAAGGAGCTTTCAAAAGGGAAAGAGCAATTGCTTACTCTCTTGCTCAAAAGCAATGCAGATCAACCTCAAGTTATAATTCACGAACTACTGGCTCTGTTTCCTCTCTGAAGAGCCATGAGATTAACAAAGCTAACTGGGGGTGGACTTGGTTGGAGCGTTGGATGGCAGCCAAGCCTTGGGAGAGTAGATTGATGGAGCAATCTCAGGCTGAAGGCTTGTTAGATAAAACCCCACATGCAAAGAAGTTTGAAGAATCCTTTGTGAACTCTAATTCCAAATCATGTTTGGTCAAAGTCAAGAAGAACAACATGACAACAAGGGTTTCTGCTAGGCCTCCCCATTTTGGCCAAGCTACTCGTTCATCCTCAAGTCCAAGTTCTGAGTTTCGATATGATGAGAGTTCTGCATCATCTTCCATTTGTACATCTACAACACCAATGTCTGGGAACACTTGTGACAGGACTGATGACAGTAATGGTAATGCTGTTGCTAGGCCTAATTACATGAACCTGACTCAGTCCACAAAGGCAAAGCTAAAGACAAGTAGTAATCATGTGTATAATAGAGCTCAAAGGCAACAGTCCATGGATGAGTTTCAATTTCTCAAGAGGGCAGCGGTTTTCTCCAATGGAGATTCCAAAAGCACTACAGCTTCTGACCCTTCAATCAACCTTTCTAGGCCACTTCACTTGGACAAGAGCTCGGTGAGGCTACGGTGA 1329 0.4688 MGASGKWVKALIGLKKPDKDEHVKEGGKSKKWRLWRSSSGDVGSWKAIKGNHHKAASEGSDSPPVVAADAYTAAVAAVVRAPPKDFRLVKQEWAAIRIQTAFRAFLARRALRALKGVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSIEGQAVQNMLNERRSKLELLKQAEEGWCDSRGTVEDVKAKIQMRQEGAFKRERAIAYSLAQKQCRSTSSYNSRTTGSVSSLKSHEINKANWGWTWLERWMAAKPWESRLMEQSQAEGLLDKTPHAKKFEESFVNSNSKSCLVKVKKNNMTTRVSARPPHFGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCDRTDDSNGNAVARPNYMNLTQSTKAKLKTSSNHVYNRAQRQQSMDEFQFLKRAAVFSNGDSKSTTASDPSINLSRPLHLDKSSVRLR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1368g00002 442 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Vium1368g00002 442 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Vium1368g00002 442 MobiDBLite consensus disorder prediction 308 368 - -
Vium1368g00002 442 PANTHER IQ-DOMAIN 5-RELATED 1 411 - -
Vium1368g00002 442 Pfam Protein of unknown function (DUF4005) 335 414 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1368g00002 Vium-Chr1368 13532 15952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1368g00002 1 432 IQD Protein Family AT2G26180 60.138 7.31e-149 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1368g00002 - - gmx:100799714 692.96