Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13685g00003 ATGTCTTCTTCCTCCTCTTCCACACACCACCAAATCTCGCTTCCCCTTCCTCACACTCTTCTACCTTCTTCCTTCACAACCCCACAGGGTAACCCCCCACGCAATCCCATCCCCATCTCCATGCTTCGCTTCTGCACCTCCAAAACTGCACAACATAATGCACTACGAGATGGGATCTCGCCCTACAACCCTTCTTCTGCTACCCAAGTCTTTTCTTCCTCGCTGCCTCTCAATACTCACAATGAAACCGATGACTACGACTGCGACAGTGAGGAGTGTGAAGCGTTGGTAGAAGAAGTTCCAATTCCACCCAAGTGCTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCGGCGGAAGTTCATAACTTGTCTGAAAAGAGGAGGAGGAGTAGGATCAATGAAAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCCAACAAGACTGACAAGGCTTCGATGCTTGATGAAGCTATTGAATACCTCAAACAGCTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTTCTTTCCAGAAGCATTGCAACCCCAGCAATTGTCTCAGATAAGAATGGATTCAAGTGAAGAAAACAGATCTATGCCCTATTCATCCAATATGCCTAACAAACAAATTGTGGCAGATCAGCCATCCATGTCCACCCCATCATATATATTCAACTCAGAAACTTCTTTTAGACTGGAATCTCATATTTCTGACAATATAAGATCATTTCAACACACAGGTTTTTCTGAGATATGCAGAGAAGACATATTGCAGCACCAACATTTAAATGCAAACAATTCAGATACCAACCCATTAGTTTCTTCTCAAGGCGCATTGGCTACAGCATCAGTTTCCTTTGATATGCAAAAATCTGCAGTTAAAGACAGCAGCTCTTTAGGAAACTGCATCCCTGGAAGTGATCAATCTAGACTGGTGTTGAGAAATAATGAGCCAACATTATTCTAA 996 0.4287 MSSSSSSTHHQISLPLPHTLLPSSFTTPQGNPPRNPIPISMLRFCTSKTAQHNALRDGISPYNPSSATQVFSSSLPLNTHNETDDYDCDSEECEALVEEVPIPPKCFRSGSSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMFFPEALQPQQLSQIRMDSSEENRSMPYSSNMPNKQIVADQPSMSTPSYIFNSETSFRLESHISDNIRSFQHTGFSEICREDILQHQHLNANNSDTNPLVSSQGALATASVSFDMQKSAVKDSSSLGNCIPGSDQSRLVLRNNEPTLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13685g00003 331 CDD bHLH_AtPIF_like 118 179 IPR047265 -
Vium13685g00003 331 SMART finulus 123 172 IPR011598 GO:0046983
Vium13685g00003 331 MobiDBLite consensus disorder prediction 1 39 - -
Vium13685g00003 331 Coils Coil 156 176 - -
Vium13685g00003 331 MobiDBLite consensus disorder prediction 1 28 - -
Vium13685g00003 331 MobiDBLite consensus disorder prediction 107 130 - -
Vium13685g00003 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 177 IPR036638 GO:0046983
Vium13685g00003 331 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 67 260 IPR031066 -
Vium13685g00003 331 Gene3D - 112 176 IPR036638 GO:0046983
Vium13685g00003 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 117 166 IPR011598 GO:0046983
Vium13685g00003 331 FunFam Basic helix-loop-helix transcription factor 112 175 - -
Vium13685g00003 331 Pfam Helix-loop-helix DNA-binding domain 121 167 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13685g00003 Vium-Chr13685 12124 15718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13685g00003 81 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 54.460 2.90e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium13685g00003 HLH 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13685g00003 - - vun:114177198 486.878