Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13685g00001 ATGAACCCTCATGGTGGCTCAGGTGGAGAAGCTAATGCAAACAACCAAAATTATTTGAGGCCTCGGTTTTCTAGTGAAACACAAGACAGGCTGCGTCCCTTATTTCCCCTCTTTGCTACTGAGGAAGACTTTGATCAGCCAGAAGTGAATTTCCCTCAACAAGGTGGCAACAACATTGGTGCCACAACTGATGTTCCACTTGAGGAAACCCCTAATGTTGTAGCACCGGAATCAAACATTTACTCATCAAGCTCCTTTGCTGGAACTTCTCCAAATCCTGAGGAAAATGTAGACTTGTATCTGAACTTTGGCATGAGCGGTCAGGGTGAAACAATTACTCCTGCTATGGTTCCAAGTTCGAACGTTGCACTTAGCGCGCATGGAAGCGACTCAAGCAGCGTCAACATATCGAGAAAAAGAAGCCTCCCTGAAAACGCTTCTCCAAATATAGAAGAACCCAAAAGATTTGATACTCGGTCTCAGGTGAGAGCTACCCGCAACGAAATTCCACACATTGCAGAAACAACGGTTCCACCAACCAACATGAGAGCTGACTGGATGGATAATACTGACCATAGAATAGGTTCTCATGCTCAACCTTTTATTTCAACACATTCCCTTCACTCTTCTTTCCAACCCTCACTTTCCGTTGAGCCTCTATCTTTTCACAGTACTTCATTCATGTCTGGTCCTGCCTTCACTGTAAACACCATGACCAATGCTCCTCACTCAATATCCTCTGGCTTTCCTCACGCTGGACTCCATATTATGGCTCCATTTTATCAACATGGGAACAACATGTTTGGTCCTGTCGTAACATCAATGGGTAATTTTCCCACTTATCGACCAAACAGGTTTTACGTTGATACTCATCCAGATACTTCTAGAAGGGCTCTTTCTTTTGTTCTCCCCCATACGTTGGAACCCCCGTTGGAACCACTGCATCTACTACCTGGAATTGTGGGAAATGGTAATACTTACCACCCTCTGAGTGGTCATGCTAGCTCTTCATCTTGGGTTCCTCCACAGGGCTCACGAGGAATGAATCATTTTGCTGCAGTAAGTAGTCCTGGCCCTCTGAACCACCTGAGTCTTGTGCAAACATCATCATCTGCAATTCCACCCAATTTCATTCATGAACCCGCTTTTCCGCTTCCACAATTTCCTTCTGAGGAAACCAGAAGAAGGCTTCCAAATGGGGTTCAATCTATCCTTAATTCTTTAGGCGATGGTCACGCTCTGAGGTTTGAGGAGTTGATGATCCTCGACTACTCACTTGTGTTACGTGCGTTTCAGATAGAGCACCCTGAACTATTCGAGACATCGCGATTCACGGGCCTGAGTCTTGAAACGATAACTCAATACATGGAGCGTCAAACTTTCTTGGCTGTTGATGGAGATGATTCAGAACAAAATAAAGAAAGATGTCCCGTTTGTCTGGAAGAATTTTGCAACGGAGAGGATATTGGGAAGCTGCATTCTTGCGTGCACAAGTTTCACTTTGATTGCATCAAAACTTGGCTCAACCACAGGAACCGTTGCCCCGTCTGCAGAAAAACTGGGTTGGAAACGTCTAATGAGCAAAATGTAGGAGGTAAAGCAGCAGATGCAGCTGTGGTTCACGATGAAGGTGACAGTCAATAG 1644 0.4513 MNPHGGSGGEANANNQNYLRPRFSSETQDRLRPLFPLFATEEDFDQPEVNFPQQGGNNIGATTDVPLEETPNVVAPESNIYSSSSFAGTSPNPEENVDLYLNFGMSGQGETITPAMVPSSNVALSAHGSDSSSVNISRKRSLPENASPNIEEPKRFDTRSQVRATRNEIPHIAETTVPPTNMRADWMDNTDHRIGSHAQPFISTHSLHSSFQPSLSVEPLSFHSTSFMSGPAFTVNTMTNAPHSISSGFPHAGLHIMAPFYQHGNNMFGPVVTSMGNFPTYRPNRFYVDTHPDTSRRALSFVLPHTLEPPLEPLHLLPGIVGNGNTYHPLSGHASSSSWVPPQGSRGMNHFAAVSSPGPLNHLSLVQTSSSAIPPNFIHEPAFPLPQFPSEETRRRLPNGVQSILNSLGDGHALRFEELMILDYSLVLRAFQIEHPELFETSRFTGLSLETITQYMERQTFLAVDGDDSEQNKERCPVCLEEFCNGEDIGKLHSCVHKFHFDCIKTWLNHRNRCPVCRKTGLETSNEQNVGGKAADAAVVHDEGDSQ 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13685g00001 547 CDD RING-H2_PA-TM-RING 476 518 - -
Vium13685g00001 547 MobiDBLite consensus disorder prediction 1 26 - -
Vium13685g00001 547 ProSiteProfiles Zinc finger RING-type profile. 476 518 IPR001841 -
Vium13685g00001 547 SUPERFAMILY RING/U-box 470 525 - -
Vium13685g00001 547 MobiDBLite consensus disorder prediction 124 144 - -
Vium13685g00001 547 Pfam Ring finger domain 475 518 IPR001841 -
Vium13685g00001 547 MobiDBLite consensus disorder prediction 124 161 - -
Vium13685g00001 547 SMART ring_2 476 517 IPR001841 -
Vium13685g00001 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 521 IPR013083 -
Vium13685g00001 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 117 522 IPR045191 GO:0061630
Vium13685g00001 547 MobiDBLite consensus disorder prediction 7 24 - -
Vium13685g00001 547 MobiDBLite consensus disorder prediction 527 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13685g00001 Vium-Chr13685 7772 10977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13685g00001 394 524 C3H Transcription Factor Family AT2G15530 28.947 5.42e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13685g00001 - K10635 vra:111241966 459.529