Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13666g00001 GCTACAAGTGCAGCGATTGTTGTATTGCTGATATGTTTGGCCATTCTGTGTTTGAGATACAAGTCATCGTTGTGGCAAGAACATTTTGGGTTGACTACAAAAAGTAACCAAAATATTGAAGCATTCCTTAAAAATCATGCTGCTCTAACTATACAAAGGTATAGCTTATCAGAGGTCAAGAAAATGACAAGCAACTTCAAAGTTAAACTAGGACAAGGAGGTTTTGGTGCAGTGTACCAAGGAAAGCTATCCAATGGTAGTCACGTAGCTATAAAGATGTTAAACGAAACAAAAAAGAATGGTGAAGAATTCATCAACGAGGTTGCAAGCATCAGTAGAACTTCTCACGTTAATATTGTCACTCTTCTTGGATTCTGTCTGGAAGGCCGCAAGAGGGCTCTCGTTTATGAATTTATGTCAAACGGTTCCCTTGACAAATTCATTTATAGAGAACCTGAAAACATTGCACTCTTGAGTTGGGATATTATATATCAAATCTCAATGGGTATAGCTCAGGGGTTAGAATACTTGCACAGAGGATGCAAAACTCGAATTTTACATTTTGACATAAAGCCTCACAACATCCTTTTGGATGAGAAGTTTTGTCCTAAGATATCTGATTTTGGGTTGGCAAAACTTTGTCCTAGAAATGAAAGCATCATTTCTATGTCTGATGTCAGAGGAACTATGGGGTATGTAGCTCCAGAAGTGTTGAACAGACATTTCGCAGGAGTTTCACACAAGTCTGATGTTTATAGTTATGGAATGATGTTGCTAGAAATGGTAGGAGGAAGGAAAAACATTAATGGTGAAGCTAGCCACACTAGTGAGATATATTTTCCGAATTGGATACATAAGAGACTTCAGTTGTTCAATGATTTCAGATTCGATGAAGTGATGACCCCTGAAGAGAATGAAGTAGCAAAGAGATTGACCATTGTGGGTCTTTGGTGTATTCAAACCTTTCCAAATGACAGACCAACGATGAGTAGAGTAATTGACATGTTGGAAAACAGCATGAATTCCTTGGAAATGCCACCAAAACCTTTGCTTTCATCTCCTAACAGATCAGTGTCAGAATCTTGCTCTTGA 1092 0.3819 ATSAAIVVLLICLAILCLRYKSSLWQEHFGLTTKSNQNIEAFLKNHAALTIQRYSLSEVKKMTSNFKVKLGQGGFGAVYQGKLSNGSHVAIKMLNETKKNGEEFINEVASISRTSHVNIVTLLGFCLEGRKRALVYEFMSNGSLDKFIYREPENIALLSWDIIYQISMGIAQGLEYLHRGCKTRILHFDIKPHNILLDEKFCPKISDFGLAKLCPRNESIISMSDVRGTMGYVAPEVLNRHFAGVSHKSDVYSYGMMLLEMVGGRKNINGEASHTSEIYFPNWIHKRLQLFNDFRFDEVMTPEENEVAKRLTIVGLWCIQTFPNDRPTMSRVIDMLENSMNSLEMPPKPLLSSPNRSVSESCS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13666g00001 363 SUPERFAMILY Protein kinase-like (PK-like) 46 337 IPR011009 -
Vium13666g00001 363 SMART serkin_6 64 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13666g00001 363 MobiDBLite consensus disorder prediction 344 363 - -
Vium13666g00001 363 MobiDBLite consensus disorder prediction 345 363 - -
Vium13666g00001 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Vium13666g00001 363 ProSiteProfiles Protein kinase domain profile. 64 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13666g00001 363 FunFam PR5-like receptor kinase 139 348 - -
Vium13666g00001 363 PANTHER RUST RESISTANCE KINASE LR10-RELATED 35 354 IPR045874 GO:0004672
Vium13666g00001 363 Pfam Protein kinase domain 67 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13666g00001 363 ProSitePatterns Protein kinases ATP-binding region signature. 70 92 IPR017441 GO:0005524
Vium13666g00001 363 Gene3D Transferase(Phosphotransferase) domain 1 139 351 - -
Vium13666g00001 363 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Vium13666g00001 363 FunFam serine/threonine-protein kinase PBS1-like 32 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13666g00001 Vium-Chr13666 3914 5007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13666g00001 5 361 Receptor kinase-like Gene Family AT1G66910 49.448 1.58e-124 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium13666g00001 Pkinase 3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13666g00001 - - gmx:100798745 564.303