Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1364g00009 ATGGCGAAAGAAGATCAGGGACTTGCCATAGGAATCGACCTTGGCACAACCTACTCCTGTGCTGCAGTGTGGCGTGAACATCATCGTCGAGTGGATATCATTCATAATGACCAAGGCCATAACACCACTCCTTCTTTTGTTGCTTTCACAGACCATGAAAGGTTGATTGGTAATGCTGCTAAAAACCAGGCTGCCACCAATCCACAAAACACTATCTTTGATGCCAAGAGGTTGATAGGTAGAAAATACAGTGATCCTGTTGTTCAGAAAGATATGATGTTATGGCCATTCAAGGTTGTTGCTGGTGCTAATGACAAACCTATGATCACCCTTAACTATAAGGGTAAGGAGAAACAATTTTGTGCTGAGGAAATTTCATCCATGGTCCTGGTGAAGATGAGAGAGATTGCAGAGAGCTATTTGGAAACCAGGGTGAAGAATGCGGTGGTTACTGTGCCTGCTTATTTCAATGACTCTCAGCGTAAGTCTACCATAGATGCTGGAACCATTGCTGGCCTTAACATCATACGTATAATCAACGAACCAACTGCTGCAGCTATTGCATACGGTCTTGACAGAAGGAATAATTGTGTTGGAGAGAGAAACGTTTTCATTTTTGATCTCGGTGGTGGTACTTTTGATGTTTCTATCCTAACGATTAAGGGTAAGATGTTTCAAGTTAAGGGAACAGCTGGAAACACTCACCTTGGAGGAGAGGACATTGATAACAGAATGGTGAACTACTTTGTGGAGAAAATAAAGAAAGAAAAGAAGTTGGACATTAGTGGAAACCCTAGAGCGTTAAGGAGGTTGAGAAGTGCCTGTGAGAGGGCCAAAAGGACACTATCACATGCTGTCAGTGCCACAATTGAAGTAGATGGTTTATCTAATGACAATGACTTTTTTTCTTCAATCACTCGTGCAAGATTTGAGGAAATCAACATGGAGCTATTTAACCAGTGTATGGAGACAGTAGATAGGTGCCTTGCTGATGCAAAAATGGAGAAGAGAAGTATGCATGATGTTGTTCTTGTTGGTGGGTCTTCTAGGATTCCCAAAGTTCAAGAATTATTGCAAGATTTCTTTGAGGGAAAGGATCTGTGCAAAAGCATAAACCCTGATGAAGCTGTAGCCCATGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGTAGGTATTAAGAATGTTCCAGACATGGTGTTGCTGGATGTAACACCGTTATCACTTGGTATTCATGTAATGGGAGATATGATGAGTGTAATGATTCCAAGGAATACTACTATTCCTGTGAAGAGGACGCAACAATATTTGACAAGTGTAGATAACCAATCATCTGTTAAAATAAAGGTTTACGAGGGTGAGAGAACAAGAAGCAGGGAAAACAATTTGTTGGGTTCTTTTAAACTTTCTGGCTTTCCTCGAGCTCCTAGGAACCATCCTTTTGATGTGTGCTTTGCCATAGATGAAAATGGTATACTATCTGTCTCTGCTAAGGAAGAAACAACTGGCATCAGCAATAAGATGATCATAACCAATGACGTAGATCGACTGTCAGCGGAAGAAATCTATAAAATGATTCAAGAAGCAGAGGAATACAAAGCTGAAGATAAGAAATTCCTTAGGAAGGCCAAAACAATGAATAAAATTGATGACTATGCTTACAATATAAAGAAAGCTTTGGAAAAAGAGAATTTCAGTTCAAAAGTTTGCTCAGAAGACAGGGAAAAGATCAGTTCTGCAATAACTAAGGCCACAGAGTTACTTGATGGTGATCAGCAGGATGAGGAAGTAGATGTGTTTGAGGATCATCTGAAAGAACTTATTAACCTCTTTGAACGCTTTGTTGAAAAGTCTGATTAG 1857 0.4039 MAKEDQGLAIGIDLGTTYSCAAVWREHHRRVDIIHNDQGHNTTPSFVAFTDHERLIGNAAKNQAATNPQNTIFDAKRLIGRKYSDPVVQKDMMLWPFKVVAGANDKPMITLNYKGKEKQFCAEEISSMVLVKMREIAESYLETRVKNAVVTVPAYFNDSQRKSTIDAGTIAGLNIIRIINEPTAAAIAYGLDRRNNCVGERNVFIFDLGGGTFDVSILTIKGKMFQVKGTAGNTHLGGEDIDNRMVNYFVEKIKKEKKLDISGNPRALRRLRSACERAKRTLSHAVSATIEVDGLSNDNDFFSSITRARFEEINMELFNQCMETVDRCLADAKMEKRSMHDVVLVGGSSRIPKVQELLQDFFEGKDLCKSINPDEAVAHGAAVQAALLSVGIKNVPDMVLLDVTPLSLGIHVMGDMMSVMIPRNTTIPVKRTQQYLTSVDNQSSVKIKVYEGERTRSRENNLLGSFKLSGFPRAPRNHPFDVCFAIDENGILSVSAKEETTGISNKMIITNDVDRLSAEEIYKMIQEAEEYKAEDKKFLRKAKTMNKIDDYAYNIKKALEKENFSSKVCSEDREKISSAITKATELLDGDQQDEEVDVFEDHLKELINLFERFVEKSD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1364g00009 618 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vium1364g00009 618 Gene3D - 10 386 - -
Vium1364g00009 618 Gene3D Actin; Chain A, domain 4 237 320 - -
Vium1364g00009 618 Pfam Hsp70 protein 9 614 IPR013126 GO:0005524|GO:0140662
Vium1364g00009 618 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vium1364g00009 618 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 38 50 - -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 339 355 - -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 60 68 - -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 397 416 - -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 477 493 - -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 8 21 - -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 211 221 - -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 148 168 - -
Vium1364g00009 618 PRINTS 70kDa heat shock protein signature 371 391 - -
Vium1364g00009 618 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Vium1364g00009 618 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Vium1364g00009 618 Gene3D - 546 617 IPR029048 -
Vium1364g00009 618 FunFam Heat shock 70 kDa protein 73 128 - -
Vium1364g00009 618 FunFam Heat shock 70 kDa protein 392 545 - -
Vium1364g00009 618 Gene3D - 73 128 - -
Vium1364g00009 618 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524|GO:0140662
Vium1364g00009 618 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 517 614 IPR029048 -
Vium1364g00009 618 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vium1364g00009 618 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 546 IPR029047 -
Vium1364g00009 618 FunFam Heat shock protein 70 10 201 - -
Vium1364g00009 618 Gene3D - 194 368 - -
Vium1364g00009 618 FunFam Heat shock 70 kDa 237 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1364g00009 Vium-Chr1364 75596 77576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1364g00009 1 609 Calmodulin-binding Proteins AT3G12580 65.794 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1364g00009 K03283 - gmx:102667572 916.376