Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1364g00008 ATGGCGAAAGAAGATCAGGGACTTGCCATAGGAATCGACCTTGGCACAACCTACTCCTGTGCTGCAGTGTGGCGTGAACATCATCGTCGAGTGGATATCATTCATAATGACCAAGGCCATAACACCACTCCTTCTTTTGTTGCTTTCACAGACCATGAAAGGTTGATTGGTAATGCTGCTAAAAACCAGGCTGCCACCAATCCACAAAACACTATCTTTGATGCCAAGAGGTTGATAGGTAGAAAATACAGTGATCCTGTTGTTCAGAAAGATATGATGTTATGGCCATTCAAGGTTGTTGCTGGTGCTAATGACAAACCTATGATCACCCTTAACTATAAGGGTAAGGAGAAACAATTTTGTGCTGAGGAAATTTCATCCATGGTCCTGGTGAAGATGAGAGAGATTGCAGAGAGCTATTTGGAAACCAGGGTGAAGAATGCGGTGGTTACTGTGCCTGCTTATTTCAATGACTCTCAGCGTAAGTCTACCATAGATGCTGGAACCATTGCTGGCCTTAACATCATACGTATAATCAACGAACCAACTGCTGCAGCTATTGCATACGGTCTTGACAGAAGGAATAATTGTGTTGGAGAGAGAAACGTTTTCATTTTTGATCTCGGTGGTGGTACTTTTGATGTTTCTATCCTAACGATTAAGGGTAAGATGTTTCAAGTTAAGGGAACAGCTGGAAACACTCACCTTGGAGGAGAGGACATTGATAACAGAATGGTGAACTACTTTGTGGAGAAAATAAAGAAAGAAAAGAAGTTGGACATTAGTGGAAACCCTAGAGCGTTAAGGAGGTTGAGAAGTGCCTGTGAGAGGGCCAAAAGGACACTATCACATGCTGTCAGTGCCACAATTGAAGTAGATGGTTTATCTAATGACAATGACTTTTTTTCTTCAATCACTCGTGCAAGATTTGAGGAAATCAACATGGAGCTATTTAACCAGTGTATGGAGACAGTAGATAGGTGCCTTGCTGATGCAAAAATGGAGAAGAGAAGTATGCATGATGTTGTTCTTGTTGGTGGGTCTTCTAGGATTCCCAAAGTTCAAGAATTATTGCAAGATTTCTTTGAGGGAAAGGATCTGTGCAAAAGCATAAACCCTGATGAAGCTGTAGCCCATGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGTAGCGGAAGAAATCTATAAAATGATTCAAGAAGCAGAGGAATACAAAGCTGAAGATAAGAAATTCCTTAGGAAGGCCAAAACAATGAATAAAATTGATGACTATGCTTACAATATAAAGAAAGCTTTGGAAAAAGAGAATTTCAGTTCAAAAGTTTGCTCAGAAGACAGGGAAAAGATCAGTTCTGCAATAACTAAGGCCACAGAGTTACTTGATGGTGATCAGCAGGATGAGGAAGTAGATGTGTTTGAGGATCATCTGAAAGAACTTATTAACCTCTTTGAACGCTTTGTTGAAAAGTCTGATTAG 1476 0.4079 MAKEDQGLAIGIDLGTTYSCAAVWREHHRRVDIIHNDQGHNTTPSFVAFTDHERLIGNAAKNQAATNPQNTIFDAKRLIGRKYSDPVVQKDMMLWPFKVVAGANDKPMITLNYKGKEKQFCAEEISSMVLVKMREIAESYLETRVKNAVVTVPAYFNDSQRKSTIDAGTIAGLNIIRIINEPTAAAIAYGLDRRNNCVGERNVFIFDLGGGTFDVSILTIKGKMFQVKGTAGNTHLGGEDIDNRMVNYFVEKIKKEKKLDISGNPRALRRLRSACERAKRTLSHAVSATIEVDGLSNDNDFFSSITRARFEEINMELFNQCMETVDRCLADAKMEKRSMHDVVLVGGSSRIPKVQELLQDFFEGKDLCKSINPDEAVAHGAAVQAALLSVAEEIYKMIQEAEEYKAEDKKFLRKAKTMNKIDDYAYNIKKALEKENFSSKVCSEDREKISSAITKATELLDGDQQDEEVDVFEDHLKELINLFERFVEKSD 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1364g00008 491 Pfam Hsp70 protein 9 389 IPR013126 GO:0005524|GO:0140662
Vium1364g00008 491 Pfam Hsp70 protein 391 487 IPR013126 GO:0005524|GO:0140662
Vium1364g00008 491 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vium1364g00008 491 Gene3D - 391 489 IPR029048 -
Vium1364g00008 491 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 418 488 IPR029048 -
Vium1364g00008 491 Gene3D Actin; Chain A, domain 4 237 320 - -
Vium1364g00008 491 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vium1364g00008 491 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vium1364g00008 491 Gene3D - 194 368 - -
Vium1364g00008 491 FunFam Heat shock protein 70 10 201 - -
Vium1364g00008 491 PANTHER HEAT SHOCK PROTEIN 70KDA 9 389 IPR013126 GO:0005524|GO:0140662
Vium1364g00008 491 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Vium1364g00008 491 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vium1364g00008 491 Gene3D - 73 128 - -
Vium1364g00008 491 FunFam Heat shock 70 kDa 237 320 - -
Vium1364g00008 491 Gene3D - 10 386 - -
Vium1364g00008 491 PRINTS 70kDa heat shock protein signature 148 168 - -
Vium1364g00008 491 PRINTS 70kDa heat shock protein signature 211 221 - -
Vium1364g00008 491 PRINTS 70kDa heat shock protein signature 371 391 - -
Vium1364g00008 491 PRINTS 70kDa heat shock protein signature 8 21 - -
Vium1364g00008 491 PRINTS 70kDa heat shock protein signature 38 50 - -
Vium1364g00008 491 PRINTS 70kDa heat shock protein signature 339 355 - -
Vium1364g00008 491 PRINTS 70kDa heat shock protein signature 60 68 - -
Vium1364g00008 491 FunFam Heat shock 70 kDa protein 73 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1364g00008 Vium-Chr1364 75596 77576 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1364g00008 1 489 Calmodulin-binding Proteins AT5G02500 64.417 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1364g00008 K03283 - gmx:102667572 633.639