Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1364g00004 ATGCAGCTTCAATTTGATGCTCGGTTTTTTATGTCTATTGTGTTTCTTTGTTTTGTTCGGTTGTTATGGTATTTGTACACTTCCTTTGTGGAGAAGCCAAAGAAGCTACGTTCAAAGCTAGTGAAGCAAGGTATCAGTGGCCCACCTCCAACTATTCTGCTTGGAAATATTTTGGAGTTAAAGGAAGCTCACTCTGCCGCTTCAAAGCCTCCTCCTCCTTCTTCTTCTTCAAAAGTCCCTTCCTCTCACGACTGTGCTGCTCTTCTCCTTCCACTATTTGAGAAATGGAGAAACGAATATGGTCAAGTGTTCACGTTTTCTCTTGGAACCATTCAAATAATGTGCGTGAACCAACCAGATATGGTGAGAGACTTCACTGTATGCACATCCTTGGACTTGGGGAAGTCTGCATATCAACTGAAAAACCTAGAGCCTTTGTTGGGTCAAGGCATTTTATCTTCAAATGGGGCAAAATGGGTCCATCAAAGAAAGATCCTAGCTCCAGAACTATACATGGACAAGGTTAAGGGAATGATGAATATAGTCAGTGAGTCTGCTGTATCTGTGGTAAACTCGTGGAGTAAAAGAATAGAAGCAGAAGGTGGAGTTGCTGACATCGAAATTGACGAGTGCATGAGAAATTTCTCTGGGAATGTTATTTCAAAAGCATGCTTTGGAAGCAATTATACCAAGAGTGAAGAGATTTTCTTGAGATTCGTAGCTCTCCAAGAGTTATTGTCCTGGAAAAATATGTTCAGACTTATCCCTGGCATGAGCTACCTTCCGTTAAAGACCAATAGAGAAATATGGACATTAGAAAAGGAGGTGAAAGATATGATACTCCAGGTGGTGAAGGAAAGAAAGGAAACCAGTTTTGAGAAGGACTTGCTGCAAGTGGTTCTTGAAAATGTTAAGGACACTAAGCTAAGTAAAGAGGCCATTGACAATTTTATCGTTGATAACTGCAAGAATATATACTTGGCAGGCTATGAGACAACTGCAGTTTCTGCTACATGGTGCCTGATGCTGCTGGCCGCAAACCCAGATTGGCAAGATCGTGTTCGTGCTGAGGTCACAGAAATTTGCAGTGGTAGAATCCCAGATTTTAGTATGCTTGGTAAGATGAAGCAGCTAGGAATGGTTATTAATGAAGCATTGCGGCTTTATCCTCCCGTGACTGTGATGTCAAGAGAGGCCTTGGAGGACATGAAATTTGGGAACCTTGATGCTCCTAAGGGGCTTAATATTTGGGTAATGGTATTGAGTTTGCATACAAATCCAGATATCTGGGGAGATGATGCCTACGAATTCAAGCCAGAAAGATTTGCCAATGGAACCACAGGCTGTTGTAAGCTGCCACACGTGTACATGCCCTTTGGGGTTGGTCCACGAGTGTGTCTTGGACAGAACTTGGCTATTGTGGAACTTAAGATGATCATAGCTCTCATACTGTCCAAATTCACTTTCTCACTCTCTCCACGCTACATTCATTCGCCCACTCTCAGGTTGCTCGTAGAGCCTGAGCATGGAGTCAATATCTTGGTCAAAAAACTATGA 1557 0.4252 MQLQFDARFFMSIVFLCFVRLLWYLYTSFVEKPKKLRSKLVKQGISGPPPTILLGNILELKEAHSAASKPPPPSSSSKVPSSHDCAALLLPLFEKWRNEYGQVFTFSLGTIQIMCVNQPDMVRDFTVCTSLDLGKSAYQLKNLEPLLGQGILSSNGAKWVHQRKILAPELYMDKVKGMMNIVSESAVSVVNSWSKRIEAEGGVADIEIDECMRNFSGNVISKACFGSNYTKSEEIFLRFVALQELLSWKNMFRLIPGMSYLPLKTNREIWTLEKEVKDMILQVVKERKETSFEKDLLQVVLENVKDTKLSKEAIDNFIVDNCKNIYLAGYETTAVSATWCLMLLAANPDWQDRVRAEVTEICSGRIPDFSMLGKMKQLGMVINEALRLYPPVTVMSREALEDMKFGNLDAPKGLNIWVMVLSLHTNPDIWGDDAYEFKPERFANGTTGCCKLPHVYMPFGVGPRVCLGQNLAIVELKMIIALILSKFTFSLSPRYIHSPTLRLLVEPEHGVNILVKKL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1364g00004 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Vium1364g00004 518 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS P450 superfamily signature 457 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS P450 superfamily signature 466 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PANTHER CYTOCHROME P450 FAMILY MEMBER 19 510 - -
Vium1364g00004 518 Gene3D Cytochrome P450 31 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 SUPERFAMILY Cytochrome P450 71 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 Pfam Cytochrome P450 93 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS E-class P450 group I signature 215 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS E-class P450 group I signature 97 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium1364g00004 518 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1364g00004 Vium-Chr1364 60564 63123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1364g00004 121 515 Cytochrome P450 AT5G24900 42.998 1.90e-123 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1364g00004 K24544 - gmx:100785420 785.408