Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13646g00001 ATGTTTACATGCATAGCGTGTACGAAGCAAACGGCGGAGGAAGGGGAAGAAGGTTGTGAGAGTGGCACGTCGAGTACAAAAGAAGTTGTCAAAAGTCTGAGTGCGCAGTTAAAGGATATGGTACTGAAGTTTTCAGGTTCTTACAAGCAGTGCAGACCTTGCACAGGGTCCAGTGCCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCCTATATTGGAGGAGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCTATATCCCTGGTGGTAGATCAGACCAAAGATTTATGGGTGGCTTGAATGGTGATAGGACCTCTAGAGGCCCTGAGTCAGCACCAGCATGTGATGTTGTTGTTGAGGAAGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGTGTTCACATTACCTTTGTGTCTCTTCCTAATGGTGGAAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAGCTTTACAATGTCCAGAGATTCAATCGACAAGCTCTTAACACTCCTTCCAGATCTGAGGATGAGGCGCAAAGAGATTCTTCTTACTCAAGACTGACATCTGGACAAGAAAGCCCGGGGTCGATGTCGTTGAAGGAATGGACAACAAAGGAATCACTATAAAACCCTCATTGAATAACCAATCTGAAGCTATGGATTCAAGGTGGTGGTCCAAACTTCCCAGCAGGATCATCTGTGGAAGCATCTAGGACAACCACTTCTTCTAGAGACGAGCCTTCAATGAGCAATGCTAGTGACCTGGAGGCAGAATGGATTGAGCAAGATGAACCTGGAGTGTACATCACGATCAGGCAACTAGCTGATGGAACCAAGGAGCTTCGTCGTGTCAGATTCAGGTAA 969 0.4654 MFTCIACTKQTAEEGEEGCESGTSSTKEVVKSLSAQLKDMVLKFSGSYKQCRPCTGSSAYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSYIPGGRSDQRFMGGLNGDRTSRGPESAPACDVVVEEEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEAQRDSSYSRLTSGQESPGSMSLKEWTTKESLXNPHXITNLKLWIQGGGPNFPAGSSVEASRTTTSSRDEPSMSNASDLEAEWIEQDEPGVYITIRQLADGTKELRRVRFR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13646g00001 322 MobiDBLite consensus disorder prediction 218 239 - -
Vium13646g00001 322 MobiDBLite consensus disorder prediction 267 285 - -
Vium13646g00001 322 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 321 IPR044532 -
Vium13646g00001 322 MobiDBLite consensus disorder prediction 203 239 - -
Vium13646g00001 322 Pfam Transcription factor BRX N-terminal domain 22 54 IPR027988 -
Vium13646g00001 322 MobiDBLite consensus disorder prediction 263 289 - -
Vium13646g00001 322 ProSiteProfiles BRX domain profile. 139 194 IPR013591 -
Vium13646g00001 322 ProSiteProfiles BRX domain profile. 292 322 IPR013591 -
Vium13646g00001 322 Pfam Transcription factor regulating root and shoot growth via Pin3 139 193 IPR013591 -
Vium13646g00001 322 Pfam Transcription factor regulating root and shoot growth via Pin3 291 321 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13646g00001 Vium-Chr13646 2462 7800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13646g00001 1 321 Major Intrinsic Protein MIP AT1G31880 62.048 3.58e-138 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13646g00001 - - vum:124826203 530.02