Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13643g00001 TGCAAAATACAATTCTTTTCAGATGAGGAGGACAGAATCATAGTTGCTGCTCATGCAATCCATGGCAACAAATGGGCAGCCATTGCCAGGCTTCTACCCGGAAGAACGGATAATGCCATTAAAAACCACTGGAATTCCACTCTGAGGCGTCGGGGAGTTGAACTTGATAAGATTAAATTAGAATCTGGTAACTTCATGGAAGATGCCAGCTTGGAGAAAGCAAAAGCATCCTCGGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTGTAGATATCATGGATGATAAATCTGATGGTAAAGCACAAGCTGAGGGCCAATTACACCACAAAGTCAAGGATCCACCTACCCTTTTTCGGCCAGTAGCTCGTGTAAGTGCTTTCAACGTTTATCACTCAAATGATGTTATACAGCCTTCAACATCAATTCAAAGGCCAGTGCCGAAGCAAGGTCCCATTTTACAATCGTCAAGACCAGATATGGAATTTTGTAGAATGGTTGAAGGAATTTGTGGTGATCAGGCAGTACCTCACCAGTGTGGCCATGGTTGCTGTGCTTCTCCAAATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCGGAGTTCATCGAATTTTCTGAACCCCCATCTTTCCCAAATTTTGAGTTGGCTGCAATTGCTGCAGACATCAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTGAAAATGATGGGAAACACGTCTGGCAGTGCAATGTCAAATGGATCTCGAATACATATTGGCCATTAG 807 0.4349 CKIQFFSDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDASLEKAKASSEDTLSCGDVSLKSSEGRDVSSVDIMDDKSDGKAQAEGQLHHKVKDPPTLFRPVARVSAFNVYHSNDVIQPSTSIQRPVPKQGPILQSSRPDMEFCRMVEGICGDQAVPHQCGHGCCASPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIAADISNLAWLKSGLENSSVKMMGNTSGSAMSNGSRIHIGH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13643g00001 268 PANTHER MYB PROTEIN-RELATED 6 110 - -
Vium13643g00001 268 FunFam Transcription factor MYB44 5 51 - -
Vium13643g00001 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Vium13643g00001 268 MobiDBLite consensus disorder prediction 97 117 - -
Vium13643g00001 268 ProSiteProfiles Myb-like domain profile. 6 48 IPR001005 -
Vium13643g00001 268 Pfam Myb-like DNA-binding domain 6 47 IPR001005 -
Vium13643g00001 268 SUPERFAMILY Homeodomain-like 5 50 IPR009057 -
Vium13643g00001 268 Gene3D - 6 51 - -
Vium13643g00001 268 MobiDBLite consensus disorder prediction 83 117 - -
Vium13643g00001 268 SMART sant 2 50 IPR001005 -
Vium13643g00001 268 CDD SANT 6 48 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13643g00001 Vium-Chr13643 2239 3216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13643g00001 6 268 MYB Transcription Factor Family AT3G09230 45.985 1.38e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium13643g00001 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13643g00001 K09422 - gmx:100811740 470.314