Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13636g00002 ATGTGGAAATTTAAGCCATTTGGCCACAAAGAGCAGACTGGTCTTGAAGGCCGCACTGTAGATGTTGGTAATCTTAAAATAAACATTGTTAAGGCCATTGCGGAAGGAGGGTTCTCTTGTGTCTACCTAGCTCGTGATGCTGTACATATGTCAAAGCAATATGCCTTGAAGCACATAATATGCAATGATGAGGAATCACTCGGATTGGTAAAGAAGGAGATATCTGTGCTTAAGATGCTGGTAGGACATCCCAATGTTGTCACACTTCATGCACATGCTATCTTTGATATGGGTAGGACAAAGGAGGCATTCCTTGTGATGGAATTTTGTGAGAAGTCTCTGGTCAATGTGCTGGAGAGCCGCGGAGCTGGTTATTTTGATGAGACACAGGTTCTTTTGATCTTCAGGGATATCTGTAATGCAGTTTTTGCTATGCATTGCCTATCCCCACCTATTGCACACCGGGACTTGAAAGCGGAGAATCTTTTATTAAGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACTAATCACAAACGTTTTGAAAAGCCAGAAGAAATGGGGATTGAGGAAGACAATATCCGGAAGTATACAACTCCAGCCTACAGGGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAGGTCATTAATGAGAAGGTAGACATATGGGCTCTTGGATGTCTTCTTTTTCGAATATGCTACTTCAAAAGTGCATTTGATGGAGAATCAAAGCTTCAAGTCTTAAATGGAAACTACCGTATTCCCGATTTACCGAAATACAATTCATCTATCACGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAACGAGCAACTGCCCATTAATCTACAGAAGTCATTACCTGACAGGCCACCTGAATCACCCTCACCCAACAATCATGAAGGTATCTCAATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCGCCTCCTCCGCCTTCATCTGGAGAACCCAAGACTACACCACAGCCATCCCTTGCTTCTAGGGGAGGGGGCAGTGGGGGGCAGCTTGGTGCTTTCTGGTCCAGTCAGCACGCAAAGGATCCACTTGTCACTGAGGACAAGAGCAAGCCAATTTTTGATGAAGAACCATCCAGTCACCATATGCCACTGAAACATGATAGATTTCGTCCTGAAAATGAACAATTAGCCAAAAATGTTAGTACTAGCAAAGTGGTTAATGCACAAACTCATACTGTGAAAAGCAGTACACATGGAAAATTAAACAAGCCTGATACCAAACCCTCGAAGGATTTTGAAATAAACTTATTCCAAGATAAAGATCGAATGGAGAATACGGCTAACTTTCAGAACCAGGCTTTTAACTCTTTTGTTGCTGAATTCGATACCACTAAGCTCAACACTGGACTTAATAACAAATCCGAAAGGGAACAAGCATTAGAGGCTGAAGTGGAGAAACTCAAAGAGCAGCTGAAGGAAGCTAACGTGGAAAAAGCTGAAATAACCTCAAAGTTTGAAAAGCTTTCTGCTATCTGCCGATCCCAGAGGCAAGAATTGCAGGATCTCAAGCAAGCACTGGCAGGTCGGACTCCTTCACCAAGCAGAGAGGGTTTGAAAACCTCTCCTGCAATTACATCATCTGCACCTATGCAGGATAGAACTGAATGGAAAACTCCCAGTTCAGAACCTAAGTCATGGCAAGCTTTTCCTGAGGAACCCCAACAACAGAAGTCCCTTTCAGCAGGAAATACTACCAAATCAGTCAGGACAAATAATGGCAGGCAAAACAAGCAACCTGTTCAACTGGCTACTAATTTTGATTCATGGGGTTTTGGAACTGATAGCTTCAGTGCTGTACCTACTGGCAGCTCACAGATGCAAAGATCTAGCAGTGCCGGAGGTAAGTCTCAGGGTTTTGATGAGGCAAAGAGCTTTGAGAGCAAACCAACTTCTCAACCAGCTGGTTGGGCTGGTTTTTAA 2022 0.4392 MWKFKPFGHKEQTGLEGRTVDVGNLKINIVKAIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLGLVKKEISVLKMLVGHPNVVTLHAHAIFDMGRTKEAFLVMEFCEKSLVNVLESRGAGYFDETQVLLIFRDICNAVFAMHCLSPPIAHRDLKAENLLLSSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYNSSITDLIRDMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRPPESPSPNNHEGISMPSNRSPPMPRRNPPPPPSSGEPKTTPQPSLASRGGGSGGQLGAFWSSQHAKDPLVTEDKSKPIFDEEPSSHHMPLKHDRFRPENEQLAKNVSTSKVVNAQTHTVKSSTHGKLNKPDTKPSKDFEINLFQDKDRMENTANFQNQAFNSFVAEFDTTKLNTGLNNKSEREQALEAEVEKLKEQLKEANVEKAEITSKFEKLSAICRSQRQELQDLKQALAGRTPSPSREGLKTSPAITSSAPMQDRTEWKTPSSEPKSWQAFPEEPQQQKSLSAGNTTKSVRTNNGRQNKQPVQLATNFDSWGFGTDSFSAVPTGSSQMQRSSSAGGKSQGFDEAKSFESKPTSQPAGWAGF 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13636g00002 673 Pfam Protein kinase domain 30 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13636g00002 673 Coils Coil 484 539 - -
Vium13636g00002 673 SUPERFAMILY Protein kinase-like (PK-like) 28 343 IPR011009 -
Vium13636g00002 673 Gene3D Transferase(Phosphotransferase) domain 1 10 306 - -
Vium13636g00002 673 PANTHER SERINE/THREONINE PROTEIN KINASE 1 656 - -
Vium13636g00002 673 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13636g00002 673 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13636g00002 673 MobiDBLite consensus disorder prediction 301 367 - -
Vium13636g00002 673 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 305 - -
Vium13636g00002 673 CDD STKc_GAK_like 26 298 - -
Vium13636g00002 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vium13636g00002 673 MobiDBLite consensus disorder prediction 329 346 - -
Vium13636g00002 673 MobiDBLite consensus disorder prediction 539 673 - -
Vium13636g00002 673 MobiDBLite consensus disorder prediction 548 665 - -
Vium13636g00002 673 MobiDBLite consensus disorder prediction 424 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13636g00002 Vium-Chr13636 582 5580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13636g00002 26 292 Miscellaneous Gene Families AT2G34180 29.893 1.06e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Vium13636g00002 Pkinase 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13636g00002 K08853 - gmx:100808507 1127.85