Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1362g00003 ATGACTTCAATGGGCCATCCTTCTGATCAGAACCTTGAAACCAAAGAGATCGATCTGAGAAGTATGTCGTCTTCTTCACATGGTCAGGTACCACAAGTCTACAAAGTCGCAGTTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAAGACATCATAAAAGAAATATTATTTGCTGATGATCCTCTAAGACCTTTCAAAGATCAATCTATATCAAGGAAGTTCATCCTCGGTATTGAGGCCATATTTCCAATACTTAAGTGGGGAAGAAGTTACAACCTTAAAAAATTTAGAGGGGATTTAATATCTGGTCTCACTATTGCGAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGTCTCCACAGTATGGACTGTACTCAAGTTTTGTTCCACCATTGATCTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATAGGACCTGTAGCAGTGGTTTCTCTCTTGTTGGGGACCCTACTTAGTAATGAGATTGATCCTATTAAAAATGCGGAAGAATATCAGCGACTTGCTTTCACAGCCACTTTTTTTGCTGGGATTACTCAAGCAACGCTTGGTGTTCTTAGATTAGGATTCTTGATCGACTTCCTATCCCATGCTGCTATTGTCGGTTTTATGGGGGGTGCTGCTATCACAATTTCCCTTCAACAGCTCAAAGGTTTTCTTGGCATTAAAACTAAAATGTTCACAACGAAAACTGATATTGTCTCTGTGCTGCATTCAGTATTCCATACAGCCCATCATGGATGGAACTGGGAAACTATAGTCATTGGAGCTAGCTTTTTGAGTTTTCTTCTGGTCACCAAATACATTGGAAAGAAAAACAGGAGATTATTCTGGCTGCCAGCAATTGCTCCATTGATATCCGTTATTTTGTCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGAAATTGTGAGAAAAATAGAAAAAGGAATCAATCCATCATCTGTTAAAGATCTTTATTTAACAGGAGAAAACCTTGGAAAAGGTTTTAAAGTTGGCATCGTGGCAGGCATGATAGCATTGACTGAAGCCTCGGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGACGGAAACAAAGAAATGGTTGCACTAGGAACAATGAATATTGTTGGTTCGATGACTTCCTGTTATGTGGCGACTGGTTCTTTCTCTCGGTCAGCAGTAAATTTCATGGCTGGCTGCCAAACTGCAGTCTCTAACATTGTGATGTCAGTAGTTGTGTTCTTAACCCTGGAATTCATCACTCCACTTTTTAAGTACACTCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCATCAACCTTAAAGACTATGAGGCAGCAATTTTGATTTGGAAGATAGATAAATTTGACTTTGTCGCTTGCATGGGTGCATTCTTTGGCGTTGTTTTTGTCTCGGTAGAGATAGGACTTCTAATTGCTGTCTGTATATCCTTTGCAAAGATCCTACTACAAGTAACAAGACCCCGAACCGCAATTCTGGGGAAGATTCCTAGGACTAATGTCTATAGAAACATCCAACAATATCCAGAAGCTAGTAAGGTTCCAGGTGTACTGATTGTAAGAGTTGATTCTGCAGTATATTTTTCCAACTCCAATTATGTCAAAGAAAGGACATTAAGATGGCTGACGGATGAAGAAGAAAAAGTGAAAGGAGACTACCCCACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACTGATATTGATACAAGTGGCATCCAAGCCTTCGAAGAGTTACATAGAAGTCTTCAAAAGAGAGAAATTGAGCTTGTTCTGGCAAATCCTGGTCCAGTAGTGACAGAGAAGCTTTACGCATCCAATTTAGCAAACGCCATAGGAGAGGAGAAGATCTTCCTCACCGTGGCAGAGGCGGTTGCATATTGTTCTCCAAAGGTGGCCGAGGACCCTTGA 1986 0.4058 MTSMGHPSDQNLETKEIDLRSMSSSSHGQVPQVYKVAVPPRQNLFKEFQDIIKEILFADDPLRPFKDQSISRKFILGIEAIFPILKWGRSYNLKKFRGDLISGLTIASLCIPQDIGYAKLAHLSPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEIDPIKNAEEYQRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITISLQQLKGFLGIKTKMFTTKTDIVSVLHSVFHTAHHGWNWETIVIGASFLSFLLVTKYIGKKNRRLFWLPAIAPLISVILSTFFVFITRADKQGVEIVRKIEKGINPSSVKDLYLTGENLGKGFKVGIVAGMIALTEASAIGRTFASMKDYQLDGNKEMVALGTMNIVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSVVVFLTLEFITPLFKYTPNAILSAIIISAVINLKDYEAAILIWKIDKFDFVACMGAFFGVVFVSVEIGLLIAVCISFAKILLQVTRPRTAILGKIPRTNVYRNIQQYPEASKVPGVLIVRVDSAVYFSNSNYVKERTLRWLTDEEEKVKGDYPTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLQKREIELVLANPGPVVTEKLYASNLANAIGEEKIFLTVAEAVAYCSPKVAEDP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1362g00003 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
Vium1362g00003 661 Pfam STAS domain 531 649 IPR002645 -
Vium1362g00003 661 PANTHER SULFATE TRANSPORTER 48 654 IPR001902 GO:0016020|GO:0055085
Vium1362g00003 661 FunFam Sulfate transporter 31 510 656 - -
Vium1362g00003 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Vium1362g00003 661 NCBIfam sulfate permease 83 649 IPR001902 GO:0016020|GO:0055085
Vium1362g00003 661 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
Vium1362g00003 661 Pfam Sulfate permease family 96 478 IPR011547 GO:0016020
Vium1362g00003 661 SUPERFAMILY SpoIIaa-like 532 654 IPR036513 -
Vium1362g00003 661 Gene3D STAS domain 525 658 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1362g00003 Vium-Chr1362 24705 29617 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1362g00003 1 660 Inorganic Solute Cotransporters AT1G22150 72.273 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1362g00003 K17470 - gmx:100804208 1142.1