Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13629g00001 ATGAAGAGACTTGGCAGCTCCGATTCTCTGGGTGCTCTCATGACCATTTGTCCACCAACAGACGAACACAGTCCGAGGAACAACCACGTGTATGGCAGGGAGTTCCAGTCTATGTTGGAAGGACTAGACGATGAAGGGTGTGTGGAGGAACCAGGACACCACGCCGAGAAGAAACGAAGACTGAGCGTGGATCAGGTGAAAGCTTTGGAGAAGAACTTCGAAGTAGAGAACAAACTCGAACCTGACAGAAAGGTGAAGCTGGCACAAGAACTTGGCTTGCAACCAAGACAAGTTGCGGTTTGGTTCCAAAACCGTCGAGCCAGATGGAAAACGAAGCAATTGGAAAGAGACTATGGAGTCCTCAAAGCCAATTATGATTCCCTCAAACTTAATTACGACACCCTTCAACAAGACAACGAAGCCTTACTCAAAGAGATAAAGGAATTGAAATCAAGGTTGCTGCTGCAAGAAGAGAGCAACACTGAAAGCGATGTTTCGGTGAAGGAAGAGATGATAACACTGCAAGATAGTAACCCACTTTGTGAAACCGCCATTCCTGGATCCGAATCTAAGGAGTTGAGTTACGAATGCTTCAACAAGAGTGATGAAGTTTTAGGGGCTTTCAAAGACGGGTCTTCCGACAGCGACTCCAGCGCGATCTTGAACGAAGAGAATGCCAACAACAACGATATCAGTCCCAACAACGGGACGATTTCTTCTTCTGGGGTTATGCAAAGTCAGAGCTTTTTGTCATCGTCTTCTCCGATGAACTGTTTCCAGTTCCAGAAACAGTTTCCGACGCAGTACGTGAAGATGGAGGAGCATAATTTTCTGAGCGCGGACGAGGCGTGCAATTTCTTCGCGGATGAACAAGCGCCCACGCTGCAGTGGTACTGTTCAGAGGAGTGGAGTTAA 915 0.4743 MKRLGSSDSLGALMTICPPTDEHSPRNNHVYGREFQSMLEGLDDEGCVEEPGHHAEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNYDTLQQDNEALLKEIKELKSRLLLQEESNTESDVSVKEEMITLQDSNPLCETAIPGSESKELSYECFNKSDEVLGAFKDGSSDSDSSAILNEENANNNDISPNNGTISSSGVMQSQSFLSSSSPMNCFQFQKQFPTQYVKMEEHNFLSADEACNFFADEQAPTLQWYCSEEWS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13629g00001 304 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
Vium13629g00001 304 SMART HOX_1 55 116 IPR001356 GO:0003677
Vium13629g00001 304 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vium13629g00001 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 298 IPR045224 GO:0003700
Vium13629g00001 304 SUPERFAMILY Homeodomain-like 38 114 IPR009057 -
Vium13629g00001 304 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Vium13629g00001 304 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Vium13629g00001 304 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vium13629g00001 304 MobiDBLite consensus disorder prediction 215 238 - -
Vium13629g00001 304 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Vium13629g00001 304 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vium13629g00001 304 Gene3D - 52 119 - -
Vium13629g00001 304 Coils Coil 125 159 - -
Vium13629g00001 304 CDD homeodomain 57 113 IPR001356 GO:0003677
Vium13629g00001 304 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13629g00001 Vium-Chr13629 13625 15905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13629g00001 1 304 Homeobox Transcription Factor Family AT4G40060 48.137 1.85e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium13629g00001 Homeodomain 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13629g00001 K09338 - gmx:100796213 503.827