Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13627g00002 GATCAACATAAAGGATACCCTGTAAACATTTTTGGTCTCTTTTTATTCATACACACAAAACATTCCTTTCTTATATACACTAAATATTTTCCTTTTATATTAAAAAATTTTCCAGCTTGGACCGTGGCGGCTGCTGTACTCGTAGTGCTGATGGTCTTGGTTTGCTGCTTCAGGACAAAGATATTATATCCTTTGTGTTGGAAGGAAAATCCGACACATCGCGTTATTGAGAACATTTTGAAGGAACAGGGACCCCTTACCACAGCCAGGTTCAGTTATTTAGAGGTTAAGAAAATGACCAACTCTTTCAGAAATAAATTAGGACAAGGGGGATTTGGTAGCGTGTACAAAGGGAAATTACATGATGGACGTGTTGTTGCAGTAAAAATTTTATCTGTATCTAAAGGCAACGGAGAAGAATTCATCAATGAAGTTGTGAGTATTAGTAGGACTTCACATGTTAATATCATTAGACTTTTAGGATTTTGTTTTGACAATACTCACCGGGCTCTAATATACGAGTTTATGCCTAATGGATCTCTTGACAAGTTCATCTATGAAGACAAAAATGCATCAAAGGATGTTCAACATCTGGATTGGAAAATATTAAATGATATTGCAATTGGCATTGCTCGTGGATTAGAGTACTTATATAGAGGCTGCAACACTAGAATTTTACATTTTGACATAAAACCTCACAACATATTACTGGACGAGGATTTCTGTCCAAAAATTGCAGATTTTGGACTTGCAAAAGTGTGTCCTAGAAAAGAAAGTATGGTATCCATATTTGGTGCCAGAGGAACTGCAGGATATATTGCTCCAGAGGTTTTTTCCAGAAACTTTGGTGCTGTGTCACACAAATCAGATGTTTATAGTTATGGAATGATGATCTTAGAAATGGTTGGAAGAAGAAAGAATATTAAGACAAAAGTAGACCGGTCGAGTGAAATATACTTTCCTCATTGGATTTATAGTCGTCTTGAATCAAATTCAGATCTTGGTTTAGAAAATGTGAGAAATGAAAGTGAAGATGAAATGGTGAGAAAGATGACAATAGTGGGCTTGTGGTGCATACAAAGTCATCCTTCAACTCGACCAACCATAAGCAAAGTGATGGAAATGTTAGAAAGTAAAGTTGATTTATTGCAAATTCCACCTAAACCATTTTTGTCTTCTCCTTCACCATCTCCGCACAATTTGTCATATGAAAGTTTTAGTTTATAA 1227 0.357 DQHKGYPVNIFGLFLFIHTKHSFLIYTKYFPFILKNFPAWTVAAAVLVVLMVLVCCFRTKILYPLCWKENPTHRVIENILKEQGPLTTARFSYLEVKKMTNSFRNKLGQGGFGSVYKGKLHDGRVVAVKILSVSKGNGEEFINEVVSISRTSHVNIIRLLGFCFDNTHRALIYEFMPNGSLDKFIYEDKNASKDVQHLDWKILNDIAIGIARGLEYLYRGCNTRILHFDIKPHNILLDEDFCPKIADFGLAKVCPRKESMVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMILEMVGRRKNIKTKVDRSSEIYFPHWIYSRLESNSDLGLENVRNESEDEMVRKMTIVGLWCIQSHPSTRPTISKVMEMLESKVDLLQIPPKPFLSSPSPSPHNLSYESFSL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13627g00002 408 FunFam PR5-like receptor kinase 176 388 - -
Vium13627g00002 408 FunFam serine/threonine-protein kinase PBS1-like 72 175 - -
Vium13627g00002 408 SMART serkin_6 101 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13627g00002 408 ProSiteProfiles Protein kinase domain profile. 101 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13627g00002 408 PANTHER RUST RESISTANCE KINASE LR10-RELATED 74 395 IPR045874 GO:0004672
Vium13627g00002 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Vium13627g00002 408 Gene3D Phosphorylase Kinase; domain 1 77 175 - -
Vium13627g00002 408 Pfam Protein kinase domain 105 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13627g00002 408 ProSitePatterns Protein kinases ATP-binding region signature. 107 129 IPR017441 GO:0005524
Vium13627g00002 408 SUPERFAMILY Protein kinase-like (PK-like) 82 377 IPR011009 -
Vium13627g00002 408 Gene3D Transferase(Phosphotransferase) domain 1 176 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13627g00002 Vium-Chr13627 3875 5103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13627g00002 90 392 Receptor kinase-like Gene Family AT4G18250 58.521 5.36e-128 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium13627g00002 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13627g00002 - - vum:124822104 806.979