Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13627g00001 ATGGGCTCCAACCTTGTCCAGACTCCTTTACCTGTGGCCATTTTTGGTCTTTTCATTACCCTTTTACCAAGGCAGAACAACCAGACTGTGGTTTTGCAGGACGGGCTACTAGCAATTGGGAATTTGGTATGGCTATCGTATATTTGTTCAACTTCCTCTTGTTTTATCACCTTCTACTCATCCTCTGTGCCGGTTATGGATATGGGCACCAAGGTTGTCCACACTCCTTTACTTGTGGCGATCTTGGGCAACATTCAGCAGGATGGGATTTTAATTTCGGATGAAGATTTGCACCGGCGTTTACAAAACAACATCTGTGACACTTTGAATAATAGCTACAGTCTTCAATCCCATTCTCCTTTATACTCTTATTATGTAAAATATAATGTGACACTGTTCCGATGCAAACATGACCTCAATATGAAACCCCCACCACATTATTTTAATCATTCCTGCACTGAGTATGGTTATGATATCTATTATGACAGCCTTTCCTTACCAAGGAATGATGAAGCTCATAAACTTTTCTCATCCTGCTCAGTTCTTCACTTAGCAAAAAAGGACAAGGCCGATACCACAGACATTCTATCGTTTTTATCTGCTCAGATGACTGTTCAAATAGTATTATCTAAGGATTGTGATGAGTGCTATAATCTCAGAGAAGGTCAATGTCTTCTTGACCGCGATCATCAGTTCTACTGTCACAAAGAAAAATCCCGAAAGAAGATGCCGGTAGTGGCAACAGCTTCTGCCTTGGTAGTAGCTGGAGTCGTTGTTTTACTGATGGTCCTGGCTTGCTGCTTCAGGACAAATATCATCTCTGCTATTACTCTTTTGTTTCCAAGGGATCCAACCCATCGGATTATTGAGGGGTTTCTGAAGGAGCACGGACCCCTTCCTACGGCGAGGTATAGTTATTCGGAGGTTAAGAAAATGACAAACTCTTTCAGAAACAAATTAGGCCAAGGGGGATTCGGTAGTGTATATAAAGGGAAATTACACGACAGACATGTTGCGGTGAAGATTTTAAATAGATCAGAAGGCAATGGAGAAGAATTCATCAATGAAGTGGCAAGTATCAGCAGGACTTCACATGTTAACGTTGTCAGGCTTTTGGGGTTTTGTTTGGATAAGTCTAAACGGGCTCTAATATACGAGTTTATGTCTAATGGATCTCTAGATAAGTTTATATATGATGACAAAAGTTCAATGCGGGCTTCTTGCCAATTGGATTACGAAATACTATATGATATTGCAATTGGCATTGCACGTGGATTAGAGTACTTACACAGAG 1294 0.408 MGSNLVQTPLPVAIFGLFITLLPRQNNQTVVLQDGLLAIGNLVWLSYICSTSSCFITFYSSSVPVMDMGTKVVHTPLLVAILGNIQQDGILISDEDLHRRLQNNICDTLNNSYSLQSHSPLYSYYVKYNVTLFRCKHDLNMKPPPHYFNHSCTEYGYDIYYDSLSLPRNDEAHKLFSSCSVLHLAKKDKADTTDILSFLSAQMTVQIVLSKDCDECYNLREGQCLLDRDHQFYCHKEKSRKKMPVVATASALVVAGVVVLLMVLACCFRTNIISAITLLFPRDPTHRIIEGFLKEHGPLPTARYSYSEVKKMTNSFRNKLGQGGFGSVYKGKLHDRHVAVKILNRSEGNGEEFINEVASISRTSHVNVVRLLGFCLDKSKRALIYEFMSNGSLDKFIYDDKSSMRASCQLDYEILYDIAIGIARGLEYLHR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13627g00001 431 SMART tyrkin_6 314 431 IPR020635 GO:0004713|GO:0006468
Vium13627g00001 431 ProSiteProfiles Protein kinase domain profile. 314 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13627g00001 431 SUPERFAMILY Protein kinase-like (PK-like) 297 430 IPR011009 -
Vium13627g00001 431 Pfam Protein tyrosine and serine/threonine kinase 316 430 IPR001245 GO:0004672|GO:0006468
Vium13627g00001 431 FunFam serine/threonine-protein kinase PBS1-like 292 387 - -
Vium13627g00001 431 PANTHER RUST RESISTANCE KINASE LR10-RELATED 286 431 IPR045874 GO:0004672
Vium13627g00001 431 Gene3D Transferase(Phosphotransferase) domain 1 301 431 - -
Vium13627g00001 431 ProSitePatterns Protein kinases ATP-binding region signature. 320 341 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13627g00001 Vium-Chr13627 11 2440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13627g00001 303 430 Receptor kinase-like Gene Family AT5G38280 70.000 7.64e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium13627g00001 PK_Tyr_Ser-Thr 5.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13627g00001 - - vum:124822103 850.121