Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13618g00006 ATGACAAGTATTCCATCTCACATGAGAGCTTGGATCTACTCTGAATATGGGAACATAGAAGAGGTTCTCAAGTTTGATCCTAATGTGCCCACACCACACCTCATGGAAAACCAAGTGCTCATCAAAGTTGTGGCTGCAGCCATTAATCCAGTAGATTATAAGAGAGCTCTTGGTCATTTCAAGGACATTGACTCTCCTTTACCAACTGCACCAGGGTACGATGTTGCTGGTGTGGTGGTGAAAGTGGGAAATCAAGTGAAGAAATTTAAGGTTGGAGATGAAGTTTATGGTGACATCAATGAGATTACTCTGGACCATCCAAAGACTATTGGCAGTTTAGCTGAATATACTGCAGTTGAAGAGAAAGTATTGGCTCACAAACCCTCCAATTTGAGTTTTGTTGAAGCTGCAAGCCTCCCTTTGGCAATCATAACTGCTTATCAAGGACTTGAAACTGCTCAGTTCTCTGCTGGCAAATCTATACTTGTTCTGGGAGGAGCTGGTGGAGTTGGATCCCTTGTTATTCAGATCGCCAAGCATATATTTGGTGCATCTAAGATAGCAGCTACTGGTAGTACTGGAAAACTGGAATTGTTGAGAAACTTGGGAGCAGACTTGCCTATAGACTACACAAAAGAGAACTTTGAAGAACTTGCAGAGAAGTTTGATGTGGTGTACGATGCAGTAGGGCAAAGTGAAAGAGCATTGAAGGGTGTTAAAGAAGGTGGTAAAGTTGTGACAATAGTGGCACCTGCAACTCCACCAGCTATCCCTTTCTTGCTGACTTCTGATGGTGATTTGCTGGAGAAATTGAGACCTTACTTGGAGAGTGGAAAGGTGAAGCCAATATTGGATCCTAAGAGTCCCTTTCCTTTTTCTCAGACAGTGGAAGCATTTTCATATTTGAAGACTAACAGAGCTACTGGGAAAGTGGTCATATATCCCATTCCATAA 954 0.4245 MTSIPSHMRAWIYSEYGNIEEVLKFDPNVPTPHLMENQVLIKVVAAAINPVDYKRALGHFKDIDSPLPTAPGYDVAGVVVKVGNQVKKFKVGDEVYGDINEITLDHPKTIGSLAEYTAVEEKVLAHKPSNLSFVEAASLPLAIITAYQGLETAQFSAGKSILVLGGAGGVGSLVIQIAKHIFGASKIAATGSTGKLELLRNLGADLPIDYTKENFEELAEKFDVVYDAVGQSERALKGVKEGGKVVTIVAPATPPAIPFLLTSDGDLLEKLRPYLESGKVKPILDPKSPFPFSQTVEAFSYLKTNRATGKVVIYPIP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13618g00006 317 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 158 179 IPR002364 GO:0008270|GO:0016491
Vium13618g00006 317 Gene3D - 15 313 - -
Vium13618g00006 317 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 317 IPR044626 GO:0016628
Vium13618g00006 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 131 283 IPR036291 -
Vium13618g00006 317 Pfam Alcohol dehydrogenase GroES-like domain 37 98 IPR013154 -
Vium13618g00006 317 SMART PKS_ER_names_mod 17 313 IPR020843 GO:0016491
Vium13618g00006 317 SUPERFAMILY GroES-like 5 163 IPR011032 -
Vium13618g00006 317 CDD MDR_like_2 8 313 - -
Vium13618g00006 317 Gene3D - 150 264 - -
Vium13618g00006 317 Pfam Zinc-binding dehydrogenase 202 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13618g00006 Vium-Chr13618 33799 35417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13618g00006 36 258 Monolignol Biosynthesis Gene Families AT4G37980 25.296 1.17e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13618g00006 K18980 - gmx:100791274 503.442