Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1360g00004 ATGGATGGTGATAATGGTCTCAACATCCGTAACTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCACCTGGGGCTGCAGCTGATGTCATCCATGCCGGAAAAGCCATTAATCGGAGGGCGCAATGCTGCGGTTTTATCTGGCACAAATGGGGCATTTCACCACAGAGACATTGGTATGTCCCACGCGACATACCCTATGGAATACACTAGAGATGCTTGGATTAGTAGTTACAGGGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCAGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAATTGCCGAAGGAAGAAAGGGAAGTGGAAGAGGAAGCTGTTGTTGAGAAGGCAACTGGGGGCAGTCGTAAGAAAAGACAGAGTCCTAAGGTGCCGAAATCTCCCAAGGCAAAGAAGTCCAAGAGGGGCCCTCGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGTGCAAGGGTTCCAAAGAAAACTACTGAAATTGTAATAAATGGAATAGACATGGATATTTCTAGTATTCCAATCCCTGTTTGTTCATGCACAGGAGCACCTCAACAGTGTTACAGATGGGGCTCTGGAGGGTGGCAATCTGCATGTTGCACAACAGGCATGTCAGTTTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCATTCAAGAAAGTTTTGGAGAAACTTGCAGCTGAGGGTTATAACTTTTCTAATCCTATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGGTAG 852 0.4542 MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSGTNGAFHHRDIGMSHATYPMEYTRDAWISSYRDKYMNMIPTNHNYGGIPETSSAHQIQMIPPPELPKEEREVEEEAVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVHRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1360g00004 283 MobiDBLite consensus disorder prediction 135 154 - -
Vium1360g00004 283 Pfam GAGA binding protein-like family 1 283 IPR010409 -
Vium1360g00004 283 PANTHER - 1 283 IPR010409 -
Vium1360g00004 283 MobiDBLite consensus disorder prediction 111 173 - -
Vium1360g00004 283 MobiDBLite consensus disorder prediction 112 134 - -
Vium1360g00004 283 SMART GAGA_bind_2 1 283 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1360g00004 Vium-Chr1360 29561 36781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1360g00004 1 283 BBR or BPC Transcription factor family AT2G01930 52.365 2.75e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vium1360g00004 GAGA_bind 4e-110 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1360g00004 - - gmx:100784091 497.278