Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1360g00003 ATGGATGGTGATAATGGTCTCAACATCCGTAACTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCACCTGGGGCTGCAGCTGATGTCATCCATGCCGGAAAAGCCATTAATCGGAGGGCGCAATGCTGCGGTTTTATCTGGCACAAATGGGGCATTTCACCACAGAGACATTGGTATGTCCCACGCGACATACCCTATGGAATACACTAGAGATGCTTGGATTAGTAGTTACAGGGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCAGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAATTGCCGAAGGAAGAAAGGGAAGTGGAAGAGGAAGCTGTTGTTGAGAAGGCAACTGGGGGCAGTCGTAAGAAAAGACAGAGTCCTAAGGTGCCGAAATCTCCCAAGGCAAAGAAGTCCAAGAGGGGCCCTCGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGTGCAAGGGTTCCAAAGAAAACTACTGAAATTGTAATAAATGGAATAGACATGGATATTTCTAGTATTCCAATCCCTGTTTGTTCATGCACTGGAGCACCTCAACAGTGTTACAGATGGGGCTCTGGAGGGTGGCAATCTGCATTTTGCACAACAGGCATGTCATTTTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCATTTAAGAAAGTTTTTGAGAAACTTGCAGCTGAGGGTTATAACTTTTCTAATCCTATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGGTAG 852 0.4495 MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSGTNGAFHHRDIGMSHATYPMEYTRDAWISSYRDKYMNMIPTNHNYGGIPETSSAHQIQMIPPPELPKEEREVEEEAVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVHRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSAFCTTGMSFYPLPMSTKRRGARIAGRKMSIGAFKKVFEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1360g00003 283 MobiDBLite consensus disorder prediction 135 154 - -
Vium1360g00003 283 PANTHER - 1 283 IPR010409 -
Vium1360g00003 283 SMART GAGA_bind_2 1 283 IPR010409 -
Vium1360g00003 283 Pfam GAGA binding protein-like family 1 283 IPR010409 -
Vium1360g00003 283 MobiDBLite consensus disorder prediction 112 134 - -
Vium1360g00003 283 MobiDBLite consensus disorder prediction 111 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1360g00003 Vium-Chr1360 29559 31881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1360g00003 1 283 BBR or BPC Transcription factor family AT2G01930 51.351 1.67e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vium1360g00003 GAGA_bind 5.7e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1360g00003 - - gmx:100784091 489.574