Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1360g00001 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGCCACTGCCACTAATAAAAGGAAGAGAAGGCCCGCAGGAACTCCAGATCCAGATGCAGAGGTGGTGTCCCTCTCGCCCAAGACTTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCGTGGAAGCTATTGAAGAGGGAGACACCGGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCAACTTGTTTGCACCATGACCCTTGTCATGCCTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGAAAGCACAGCAATCACAATCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGCGGTACCCGGGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCCAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCCTCTGCGTGCCTTTCTAGAACAGCCTCAAGCCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGGATCATAATACCAAAGCCAACAGAACCACCCACTATTTTCATGAATAACCCTACTGCTCATGCTATTACCACTGCTGAAACCTCATCCAAGAACAACAAAATCCACCCCAACTTGGATCTCCAACTCTCAACTCCCACCACCACCAACAACAACATCAAAAACAGTTCAAACGTTGCAAACCCCATTGATGCTGCAATATCAACATCATTATCACCTAAGAGGGATCGTCACGAGAACCACTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATGTGAGTGAGAAAAATGAATCAAACAGGAACTCATCGGAGAAGAGCAGCAACAGCAACAATGGGAAGCAGTCCAACATGGCTTTATTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAGGCACAAGCCGAACTCGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACCTGCCACGCGTGCAAACAACAATTCCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAAGTTGAAAACGATAATGGAAAAGACCATGGCAAAGACAACTAA 1401 0.4782 MLANNLSPSSVPTSEPFPCTENATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHNQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRIIIPKPTEPPTIFMNNPTAHAITTAETSSKNNKIHPNLDLQLSTPTTTNNNIKNSSNVANPIDAAISTSLSPKRDRHENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNGKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKDHGKDN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1360g00001 466 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 409 IPR031140 -
Vium1360g00001 466 MobiDBLite consensus disorder prediction 194 220 - -
Vium1360g00001 466 MobiDBLite consensus disorder prediction 1 44 - -
Vium1360g00001 466 Gene3D Classic Zinc Finger 35 97 - -
Vium1360g00001 466 MobiDBLite consensus disorder prediction 1 24 - -
Vium1360g00001 466 MobiDBLite consensus disorder prediction 249 290 - -
Vium1360g00001 466 MobiDBLite consensus disorder prediction 193 224 - -
Vium1360g00001 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vium1360g00001 466 Coils Coil 354 409 - -
Vium1360g00001 466 MobiDBLite consensus disorder prediction 306 340 - -
Vium1360g00001 466 MobiDBLite consensus disorder prediction 249 340 - -
Vium1360g00001 466 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vium1360g00001 466 SMART c2h2final6 134 161 IPR013087 -
Vium1360g00001 466 SMART c2h2final6 98 128 IPR013087 -
Vium1360g00001 466 SMART c2h2final6 57 79 IPR013087 -
Vium1360g00001 466 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Vium1360g00001 466 FunFam protein indeterminate-domain 12-like 36 104 - -
Vium1360g00001 466 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1360g00001 Vium-Chr1360 10258 13483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1360g00001 20 456 C2H2 Transcription Factor Family AT2G01940 56.125 8.40e-153 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1360g00001 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1360g00001 K25871 - gmx:100800187 798.505