Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1359g00002 ATGGGGAGAATTTCTGGTGTTAGGGTTGGTTCTTCAATTGGGGGCAAATCCAAAGGAGGGAGAAAGAACAAAGATGTTGTTCAAAGTAGTAGTGGAGAAGGTTCAAGATTTTGGAAGAAATTGGGAACTTTCCTAGGTTGCATGTTTTGGAGTTCCAAAGGGGAAGATTCCTCCATAAACAAAATCAACCAAGCTGATCATGGAAGACATGTTACAAATGATGTTGACAGACAGCAGCCAATTGTCCCAAGATCCTCGTCCAACAGAAGAATAAGTAGCCATGCAAGATTGTCTGTTCCGGATCAAGAACTGTTTGAAGCTTCTTTGCTTCTTCGAAGGTTCACTTTTCAAGATCTTATGTTGGCAACAAGAACTTTTAAGGTTGAGAATTTTCATGATGAGAAAGGGTTTGGAGTTTTGTTGAAGGGTTGGATTAATCCATATGGAAACTATGCAGCAAGGCCTGGAAAAGGGATTCCCATTGCAGTAAAGGATGAAATTATTTATCTTAGTAAACTCCAACATTTAAATCTGGTCAGACTAGTCGGATTTTGTCTTGAGGATGACAAAAGGCTGCTTGTATACGAGCATATATGTGAAGGAAGTTTAGAGAAGCATCTTTTCAAGAGCGCTGTACACCTTACATGGCCTACGAGGATGAAAATTGCAATTGGAGCTGCTAATGGCATGTCATTTTTGCATGAGGAAGCTTCAAGACCATTAATATTTCGAGATTTTAAGACATCTAGTATCCTATTAGATAAGGATTACAACACAAAACTTTGTGACTTTGGTCTTGCAAAAGATGCTTCAATGGGACATGAAATGCGTTCGACAACTAAAATGGTAGGATCAAAAGGCTATGAAGCCCCAGAATATATAATGACAGGACTCCTTACTCCAAAGAGCAATGTTTATAGCTTTGGACTGGTTCTACTTGAACTATTGACAGGAAGAAGAGTTATAGATAAAACAATGCCTATAGAGGAGCAAAACTTGATAGAATGGTTAGGGCCTCGTCTTGGGAACAAAGCAAACTTCCATTATTTGATGGATCCTAGACTTGAAGGCCAATATCCAACAAAATTTGCTCATAAGACAATGAAATTAGCTATTCATTGTCTTCGCCTTGACCCAAAAACAAGACCCCTTATGAGTGAAGTACTTCATGAGTTAAAATCTTTGCATGATGACATGCTTGGATCCTCAACCTCCCATGGAAGAAGGCATAAAGGTCCATCCAACCATGTTAGTCCTAACAAGTATGGTGTTGGAATATGTCCATCATCAAATTTTCCAAGGTGCTTCCAAGCCATGCCAGAATGTCAAGACTATCCTTTACCTCTACCTCCATCTCCATCAAATCCAAGAGTTAGATCTTCCTCAAATCCTAGTTTGGAAATTTATTCAACCTAG 1416 0.3912 MGRISGVRVGSSIGGKSKGGRKNKDVVQSSSGEGSRFWKKLGTFLGCMFWSSKGEDSSINKINQADHGRHVTNDVDRQQPIVPRSSSNRRISSHARLSVPDQELFEASLLLRRFTFQDLMLATRTFKVENFHDEKGFGVLLKGWINPYGNYAARPGKGIPIAVKDEIIYLSKLQHLNLVRLVGFCLEDDKRLLVYEHICEGSLEKHLFKSAVHLTWPTRMKIAIGAANGMSFLHEEASRPLIFRDFKTSSILLDKDYNTKLCDFGLAKDASMGHEMRSTTKMVGSKGYEAPEYIMTGLLTPKSNVYSFGLVLLELLTGRRVIDKTMPIEEQNLIEWLGPRLGNKANFHYLMDPRLEGQYPTKFAHKTMKLAIHCLRLDPKTRPLMSEVLHELKSLHDDMLGSSTSHGRRHKGPSNHVSPNKYGVGICPSSNFPRCFQAMPECQDYPLPLPPSPSNPRVRSSSNPSLEIYST 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1359g00002 471 Pfam Protein kinase domain 162 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1359g00002 471 SUPERFAMILY Protein kinase-like (PK-like) 110 399 IPR011009 -
Vium1359g00002 471 PANTHER OS01G0588500 PROTEIN-RELATED 89 396 - -
Vium1359g00002 471 Gene3D Phosphorylase Kinase; domain 1 86 197 - -
Vium1359g00002 471 Gene3D Transferase(Phosphotransferase) domain 1 199 410 - -
Vium1359g00002 471 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 198 405 - -
Vium1359g00002 471 ProSiteProfiles Protein kinase domain profile. 126 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1359g00002 471 MobiDBLite consensus disorder prediction 447 471 - -
Vium1359g00002 471 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1359g00002 Vium-Chr1359 15937 26716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1359g00002 108 418 Glycoside Hydrolase AT3G07070 42.812 4.56e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1359g00002 Pkinase 8.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1359g00002 - - vum:124826039 913.679