Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1359g00001 ATGAAAAACAAAGATGTTGCTCAAGGTGCCATTGAAGAAAGATCAAGGTTTTGGAAGAAATTGAAGACTTTTCTAGGTTGCATGCTTCTCAGCTCAAAAGAGGAAGCAACCTCCAACAAAAGCAAAGATGGTGAAGGAAAAAATGTCAGAAGAGATATTGTTCGGCACAAAAGGGCAAAACCCTCATCCACCAACGAAGGGCAGGAGTTTATTGCAACTTGTTCCAATCTTCGGAGGTTCACTTTTCACGATATTCAGATTGCAACACAGAATTTTGGTTGCAGGAATTTTCTTGGTAGGGGAGGTTTTGGAACTGTGTTCAAAGGTTGGATTGATGAAAGAGGGAATTCTGCAGCAACACCTGGAACTAGGGTTCCAGTAGCAGTGAAGACTCTAAATCCAAATGGATTTCAAGGTCATAAACAATGGCTTGCTGAAATTAAATATCTGGGTGAACTCTATCATCCTAATCTAGTGAGATTGGTGGGTTATTGCATGGAGGAAGATAAAAGGGTACTCGTATACGAATACATGTGTCGAGGAAGCTTAGAGAAGTATCTGTTCCAGAGAGGAACTGTGCGACTTCCATGGCGTATCAGGATTAAAATTGCAATGGATGCTGCCAATGGTTTGACATTTTTGCACGAGGAAGCTGCACGGGCAGTGATTTTTCGAGATTTCAAGACATCCAATATCCTTTTGGATAAGGACTTCAATGCAAAACTTTCAGACTTTGGGTTTGCAAAAGATGGTCCAGTGGGAGATAAAAATCACGTGTCTACGGAGATTATGGGAACAGAAGGTTACATAGCCCCTGAGTATGTGTTGACAGGGCATCTTACATCGAAGAGTGACGTTTATAGCTTTGGGATGGTTCTCCTGGAAATGCTGACAGGAAGAAGAGCTGTGGATCAAATGAGGCCTGCAAAAGAGAAACACTTGGTGGATTGGTTGCGTCCTCGTATAAGGAGAAAAGAGAATTTTCATTACGTGATGGATCCTAGATTTGAAGGGCAGTATCCAATCAAAGATGCATATAGGGCAATGAGGTTGGCCGTTCAGTGTCTTCGGCATGATCCAAGTGGAAGACCACTGATGAGTGAAGTGGTTGGTGAGTTGAAGCATTTGCTGGCTCGTGATGATGATGATGGCATGCATTCTGCTCCCTCAATTTCACCTTCACCTTCTCCTTCACCTTCACCTTCAATCCCCTCATCCTCACTTGGCAGAATCCATGTCGGTCCCTCCAACCATGCCGCCGGTGCTAACAAGTATGGCCTTAGAACTGCTTCAGAACCCAACGTCCCACGGCGTTTTCAGGCCTCACCACTCGGCCAAGACAGCCCTCTCTTTCCACCTCCATCGTAA 1368 0.4437 MKNKDVAQGAIEERSRFWKKLKTFLGCMLLSSKEEATSNKSKDGEGKNVRRDIVRHKRAKPSSTNEGQEFIATCSNLRRFTFHDIQIATQNFGCRNFLGRGGFGTVFKGWIDERGNSAATPGTRVPVAVKTLNPNGFQGHKQWLAEIKYLGELYHPNLVRLVGYCMEEDKRVLVYEYMCRGSLEKYLFQRGTVRLPWRIRIKIAMDAANGLTFLHEEAARAVIFRDFKTSNILLDKDFNAKLSDFGFAKDGPVGDKNHVSTEIMGTEGYIAPEYVLTGHLTSKSDVYSFGMVLLEMLTGRRAVDQMRPAKEKHLVDWLRPRIRRKENFHYVMDPRFEGQYPIKDAYRAMRLAVQCLRHDPSGRPLMSEVVGELKHLLARDDDDGMHSAPSISPSPSPSPSPSIPSSSLGRIHVGPSNHAAGANKYGLRTASEPNVPRRFQASPLGQDSPLFPPPS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1359g00001 455 ProSiteProfiles Protein kinase domain profile. 92 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1359g00001 455 SUPERFAMILY Protein kinase-like (PK-like) 76 395 IPR011009 -
Vium1359g00001 455 MobiDBLite consensus disorder prediction 36 63 - -
Vium1359g00001 455 CDD STKc_IRAK 98 376 - -
Vium1359g00001 455 Gene3D Phosphorylase Kinase; domain 1 58 177 - -
Vium1359g00001 455 FunFam Serine/threonine-protein kinase BIK1 59 177 - -
Vium1359g00001 455 Gene3D Transferase(Phosphotransferase) domain 1 178 389 - -
Vium1359g00001 455 MobiDBLite consensus disorder prediction 36 64 - -
Vium1359g00001 455 Pfam Protein tyrosine and serine/threonine kinase 97 372 IPR001245 GO:0004672|GO:0006468
Vium1359g00001 455 PANTHER OS01G0588500 PROTEIN-RELATED 55 376 - -
Vium1359g00001 455 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 178 387 - -
Vium1359g00001 455 ProSitePatterns Protein kinases ATP-binding region signature. 98 130 IPR017441 GO:0005524
Vium1359g00001 455 MobiDBLite consensus disorder prediction 380 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1359g00001 Vium-Chr1359 8544 11746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1359g00001 38 406 Glycoside Hydrolase AT3G07070 44.562 3.58e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1359g00001 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1359g00001 - - vum:124826044 900.968