Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13595g00003 ATGACACCTGGTTACGAATACGATATTAATGATCTGCATCAAGAAGCTCAAGCCAGATGGCTGAAACCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTTCCAGCTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCCTGTTTCTATTTAACAAAAGAGTTCTGCGTTTCTTCCGGAAAGATGGTCATAACTGGCGCAAGAAAAGAGATGGAAGAACTGTGGGAGAAGCACACGAACGACTCAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGAAACCTAATTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGAATATGAGCATATTGTTCTTGTGCATTATAGAAACACAAGTGAGGGAAGACTCAGCTCTGGAGCTGGCGCACAATTGTCACCAAGTTCCTCTGCTGCATTTAGTCAGAGTCCTAGCCCTTATTCTGATCTGAATCCAGGGTCAACATCCATACTTGTTGATTCATATGAACCTAATCAGAGTTTCTCCAGTCCTGGAACTACAGAAGTTACGTCTGATATATTCATTCTGAACAATAAAATGGATCACATGGATGGAACCGATGCAGAATCAGGAACCTCATCTGAGCTTGAAGTTACTCAAGCTTTGCGCCGACTGGAGGTACAATTAAGTTTGAATGAGGACAGCTTTGAAGATATTGCTCCCTTCTGCAATAAGCATGAAACTGCCCATGATTCAAACCCTCTGGAAAAACAAAGGGTGATCAGCAATCAAGAGCAATCTGCTGCTTTCTCTGGACCTGATGATCAAGGGCTATTTTATGATGAATATAATGGAAGACAAGGTGATGGTGGTGAATGCTATCATGAACTAATAGAACATGGTTACCCAGATGTAAATGAAGAGGCCTTATGGACAGGGGTGCTGGAATCGTGCAATTCCTCAACTGCTGTCAAGTTACCACCAGAAAATGTATACATGGCAGCTGAAAATCAGGAAAATTCAGTATCTTTTCCGAGAAGGGTGCAAGTACCAGTTTCCAAACAGGAAGACAATCACTGGCTCAACTTCAACAGTGATAATTCTCAAAGCTCCGTTTTCTCACCACCTCAAGGGGTTGATGAAGTCAAATTTCCTGCATATTCTTCTGTGGTGGAAACACGAGTAGCTAATTCTGGCTACTACGAAACATTGTTTGACCAAAGCCAAATTATAGCACCTCTAGATGCAGATTCAAGCTTGACTATAGCACAAAAACAGAAATTTACCATTAAGACATTCTCCCCAGAATGGGGTTATGCCACTGAGACCACTAAGGTCATCATTGTTGGGTCTTTTCTATGTCATCCATCAGATTCTGCCTGGGCATGCATGCTTGGTGATGTTGAAGTTCCTGTTCAGATAATTCATGATGGTGTAATCTGTTTTGAAGCTCCTCCTCACCTTCCTAAAAAGGTTACACTGTGTATTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCGTGATAAGACTTATAGTTGCACCCAATGTAATCAATCAAAAACAGAAGCCACTAAAAGTCCGGAAGAGCTGTTATTACTTGTTAGATTAGCACAGATGCTTCTTTCTACATCAACAATAAAGAATGACCACATAGAACCGGGAATTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGACTCTTCTAGTTGGCAGTGGAACATCGACTAGTACTATTGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTTCAACAGTGGCTTTCTTACAGATCTCAGGAAAGAGATGAAGAGACAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGCATTATTCACATGGTTGCTGGATTGGGTTTTGAGTGGGCCTTGAACCCTATTCTTAGTTGTGGAGTTAACATAAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCCCGTTTCGGAAGGGAAAAAATGGTTGCTTCACTTGTAGCTTCTGGAGCATCTGCTGGAGCTGTGACAGATCCAACTGCACAAGACCCAATCGGTAAAACTGCTGCATCTATTGCAGCCAGCAATGGGAACAAGGGTCTAGCAGGATATCTTTCAGAGGTAGCTGTAACAAGCCACCTATCATCACTTACATTGGAAGAGAGTGAGTTATCTAAAAGTACTGCCCAGCTTCAGGCAGATATGACTGTGACCAGTGTCTCCAAGGAAAATCTTGCTGCCAATGAGGATCAGGCGTCACTCAAAGATACCTTGGCTGCTGTAAGAAATGTAACTCAGGCAGCTGCCCGGATACAATCTGCTTTTCGGTCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAGCTGCTGGTGTAGATGGTACGAGTATAGGTGGCTTTGGTAGCATTCCAGAAATTTCTGCTTTGTCAAAACTTGCCTTTCGAAACTCACGCGAACATAATTCAGCTGCTTTATCAATTCAGAAGAAATATCGTGGTTGGAAAGGTCGCAGAGATTTCTTATCGTTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCCTGGACAAGGTCGTGCTGCGATGGAGAAGAAAAGGAGCTGGTTTACGAGGTTTCCGACAAGAGATGGACATCCATGAAGATGAAGATGAAGATATTCTCAAGGTGTTCCGAAAACAGAAAGTGGATGTAGAAATTGAAAAGGCCGTTTCACGGGTGCTGTCCATGGTCGACTCACCAGATGCTCGTAACCAATATCATCGCATGCTTGAGAAATATCGTCAAGCTAAGGCTGAACTTGCAGATACGAGTGACGAAGCATCATCAACAACTTCTGTGGGGAATGCCTTATTTATGGAGGATGACTTCTATCCATTTCCATAG 2961 0.4309 MTPGYEYDINDLHQEAQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQKPNFQRRSYWMLDPEYEHIVLVHYRNTSEGRLSSGAGAQLSPSSSAAFSQSPSPYSDLNPGSTSILVDSYEPNQSFSSPGTTEVTSDIFILNNKMDHMDGTDAESGTSSELEVTQALRRLEVQLSLNEDSFEDIAPFCNKHETAHDSNPLEKQRVISNQEQSAAFSGPDDQGLFYDEYNGRQGDGGECYHELIEHGYPDVNEEALWTGVLESCNSSTAVKLPPENVYMAAENQENSVSFPRRVQVPVSKQEDNHWLNFNSDNSQSSVFSPPQGVDEVKFPAYSSVVETRVANSGYYETLFDQSQIIAPLDADSSLTIAQKQKFTIKTFSPEWGYATETTKVIIVGSFLCHPSDSAWACMLGDVEVPVQIIHDGVICFEAPPHLPKKVTLCITSGNRESCSEVREFEYRDKTYSCTQCNQSKTEATKSPEELLLLVRLAQMLLSTSTIKNDHIEPGIPLIKQKADDDSWSHIIETLLVGSGTSTSTIDWLLEELLKDKLQQWLSYRSQERDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLVASGASAGAVTDPTAQDPIGKTAASIAASNGNKGLAGYLSEVAVTSHLSSLTLEESELSKSTAQLQADMTVTSVSKENLAANEDQASLKDTLAAVRNVTQAAARIQSAFRSHSFRKRRAREAAAGVDGTSIGGFGSIPEISALSKLAFRNSREHNSAALSIQKKYRGWKGRRDFLSLRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGAGLRGFRQEMDIHEDEDEDILKVFRKQKVDVEIEKAVSRVLSMVDSPDARNQYHRMLEKYRQAKAELADTSDEASSTTSVGNALFMEDDFYPFP 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13595g00003 986 SMART ANK_2a 694 723 IPR002110 GO:0005515
Vium13595g00003 986 SMART ANK_2a 655 684 IPR002110 GO:0005515
Vium13595g00003 986 FunFam Calmodulin-binding transcription activator 4 isoform A 536 720 - -
Vium13595g00003 986 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 8 958 - -
Vium13595g00003 986 SUPERFAMILY Ankyrin repeat 625 717 IPR036770 -
Vium13595g00003 986 CDD IPT 426 511 - -
Vium13595g00003 986 ProSiteProfiles Ankyrin repeat region circular profile. 655 681 - -
Vium13595g00003 986 ProSiteProfiles IQ motif profile. 774 802 IPR000048 GO:0005515
Vium13595g00003 986 FunFam Calmodulin-binding transcription activator 2 828 876 - -
Vium13595g00003 986 Pfam Ankyrin repeats (3 copies) 637 715 IPR002110 GO:0005515
Vium13595g00003 986 SMART iq_5 772 794 IPR000048 GO:0005515
Vium13595g00003 986 SMART iq_5 828 850 IPR000048 GO:0005515
Vium13595g00003 986 SMART iq_5 851 873 IPR000048 GO:0005515
Vium13595g00003 986 Pfam IQ calmodulin-binding motif 854 873 IPR000048 GO:0005515
Vium13595g00003 986 Pfam IQ calmodulin-binding motif 831 849 IPR000048 GO:0005515
Vium13595g00003 986 Coils Coil 945 965 - -
Vium13595g00003 986 SUPERFAMILY E set domains 426 510 IPR014756 -
Vium13595g00003 986 Gene3D - 560 720 IPR036770 -
Vium13595g00003 986 MobiDBLite consensus disorder prediction 133 166 - -
Vium13595g00003 986 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Vium13595g00003 986 Gene3D Immunoglobulins 420 514 IPR013783 -
Vium13595g00003 986 SMART CG_1_2 12 130 IPR005559 GO:0003677
Vium13595g00003 986 Gene3D - 828 877 - -
Vium13595g00003 986 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Vium13595g00003 986 ProSiteProfiles IQ motif profile. 829 858 IPR000048 GO:0005515
Vium13595g00003 986 Pfam IPT/TIG domain 426 509 IPR002909 -
Vium13595g00003 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 875 IPR027417 -
Vium13595g00003 986 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Vium13595g00003 986 ProSiteProfiles IQ motif profile. 852 877 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13595g00003 Vium-Chr13595 23579 64131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13595g00003 5 962 CAMTA Transcription Factor Family AT1G67310 52.395 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium13595g00003 CG-1 1.4e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13595g00003 K21596 - gmx:100786880 1648.64