Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13588g00001 AATAATACTATTAGTGTTGTGTCTGCAATATTACTGCAGGGTTGTGATGCTTCGGTTTTGGTTGCGTCCACGGGAAACAACAAAGCAGAGAAGGATCACCCTGATAATCTTTCACTTGCCGGAGATGGGTTTGACACGGTGATTAAGGCAAAAGCAGCAGTGGATGCAGTTCCGCTGTGTAGGAACAAAGTTTCGTGTGCTGATATTTTAGCCATGGCAACACGAGATGTTATTGCACTGGCTGGTGGGCCTTTCTACGAAGTTGAATTGGGAAGATTTGACGGGCTAAGATCTAAAGCTTCAGACGTAAACGGGAGGCTGCCTCAGCCAGAGTTCACCTTGAACCAGCTCAATTCACTGTTTGCGGCGAACGGTCTCACCCAGACAGAAATGGTAGCCCTTTCAGGTGCGCACACTGTGGGATTCTCCCATTGCAACAAGTTCTCAAAGAGAGTGTATAATTTCAAGAGCAAAAGTGGAGTGGACCCTGCACTGAACGAGAAATACGCATCACAGCTAAAGTCAATGTGCCCAAGGAATGTGGATCCAAGGATTGCCATCGATATGGACCCGACCACACCACGAGCATTCGACAATGTTTACTACAGAAATCTTCAGCAAGGGAAGGGCCTCTTCACCTCTGACCAAGTTCTCTTCACGGATTCAAGGTCCAAGGCCACCGTCAATGCTTTTGCCAGTAGCAGCAAAATCTTCCGTGCCAATTTCGCCGCTGCCATGACCAAATTGGGTCGAGTCGGAGTAAAAAATGCACAGAATGGCAACATTCGTACAGATTGTTCAGTCATCTAA 810 0.4728 NNTISVVSAILLQGCDASVLVASTGNNKAEKDHPDNLSLAGDGFDTVIKAKAAVDAVPLCRNKVSCADILAMATRDVIALAGGPFYEVELGRFDGLRSKASDVNGRLPQPEFTLNQLNSLFAANGLTQTEMVALSGAHTVGFSHCNKFSKRVYNFKSKSGVDPALNEKYASQLKSMCPRNVDPRIAIDMDPTTPRAFDNVYYRNLQQGKGLFTSDQVLFTDSRSKATVNAFASSSKIFRANFAAAMTKLGRVGVKNAQNGNIRTDCSVI 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13588g00001 269 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Plant peroxidase signature 204 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Plant peroxidase signature 188 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Plant peroxidase signature 244 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Plant peroxidase signature 42 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Plant peroxidase signature 1 21 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 SUPERFAMILY Heme-dependent peroxidases 13 268 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Vium13588g00001 269 CDD secretory_peroxidase 13 269 IPR033905 GO:0004601|GO:0042744
Vium13588g00001 269 FunFam Peroxidase 108 249 - -
Vium13588g00001 269 ProSiteProfiles Plant heme peroxidase family profile. 11 269 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 Gene3D - 12 269 - -
Vium13588g00001 269 Pfam Peroxidase 13 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 PANTHER - 12 268 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium13588g00001 269 Gene3D Peroxidase, domain 2 108 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13588g00001 Vium-Chr13588 7 1248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13588g00001 11 266 Peroxidase AT4G37520 66.797 7.05e-128 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13588g00001 K00430 - gmx:100815654 478.789