Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13578g00002 ATGTCAAGTGGAACGACATACTGGTGTTATACATGCAGGCAGCCAATCTGGCTTGAAAGGAGAGATGCAATTTGCCCTTACTGCGATGGAGGCTTTGTGCAAGAACTATACGAGCTGCTGCGAGCAGTTTCAAGGCAACAAGGGTTTTCATCACAAAGGGAAGATTTTCATCAAGTCCCTGACATTATGGATGCTGTAAATCATGTTATGGAGCAAAGAGGTTCCGAGCCAAGAGTTGGAGTTAGAGATGGTGTTGACAATTTCATGAGGCAGAGAATGGCTGGAAGCTACACAAACTTTGATGTCAGAAGGAGGTTTGGTAGCACCCCTCTTCCTGATCAGACTTGGGGGATCTATACATCTGGTCCTTATCTTATATTTCATGGTCAACCTCCAGGGTTCACTATCTCTAACAACAGTGGCTCAAGAAGTGGTTCTGGGCATGTTGATTTTGGTCACTACTTTCTTGGTCCTAGACTTGAAGGACTCATTGAGCAGCACATAACAAATGACCGGCTTGGTCCACCTCCTGCATCACGCTCTTCTATTGATGCAATGCCAACAATTAAGATCACAAATGAACACCTCCAATCTGATTCTCACTGTGCAGTTTGTAAGGAAAGGTTTGAACTGAGTTCTGAGGCCAGGAAAATGCCATGTAGCCACATTTACCACTCAGATTGCATTGTTCCATGGTTGGTCCAGCACAATTCCTGTCCAGTTTGCCGTGTTGAGCTGCCATCTCAAGGACACTCCAGTTCCCGAAGTAGTCGTAGTAGGGGAGGAAGGAGTGGTAGTGACAGTAGTAGTGGCAGTGACAATATCTCAAGGAGAAGAGGAAATAGAGAGATGACCAGTGGAAGGAGGAATCTGCTATCATATTTGTGGCCATTTCGAACTTCTAGTTCAAATACTTGA 918 0.451 MSSGTTYWCYTCRQPIWLERRDAICPYCDGGFVQELYELLRAVSRQQGFSSQREDFHQVPDIMDAVNHVMEQRGSEPRVGVRDGVDNFMRQRMAGSYTNFDVRRRFGSTPLPDQTWGIYTSGPYLIFHGQPPGFTISNNSGSRSGSGHVDFGHYFLGPRLEGLIEQHITNDRLGPPPASRSSIDAMPTIKITNEHLQSDSHCAVCKERFELSSEARKMPCSHIYHSDCIVPWLVQHNSCPVCRVELPSQGHSSSRSSRSRGGRSGSDSSSGSDNISRRRGNREMTSGRRNLLSYLWPFRTSSSNT 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13578g00002 305 SMART ring_2 202 242 IPR001841 -
Vium13578g00002 305 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Vium13578g00002 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 249 IPR013083 -
Vium13578g00002 305 MobiDBLite consensus disorder prediction 247 275 - -
Vium13578g00002 305 MobiDBLite consensus disorder prediction 246 286 - -
Vium13578g00002 305 FunFam E3 ubiquitin-protein ligase RING1-like 165 249 - -
Vium13578g00002 305 Pfam Ring finger domain 201 243 IPR001841 -
Vium13578g00002 305 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Vium13578g00002 305 SUPERFAMILY RING/U-box 182 249 - -
Vium13578g00002 305 CDD RING-H2_RNF126-like 202 243 - -
Vium13578g00002 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13578g00002 Vium-Chr13578 2507 3762 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13578g00002 172 299 C3H Transcription Factor Family AT1G68180 40.625 2.30e-26 102