Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13578g00001 ATGTCAAGTGGAACGACATACTGGTGTTATACATGCAGGCAGCCAATCTGGCTTGAAAGGAGAGATGCAATTTGCCCTTACTGCGATGGAGGCTTTGTGCAAGAACTATACGAGCTGCTGCGAGCAGTTTCAAGGCAACAAGGGTTTTCATCACAAAGGGAAGATTTTCATCAAGTCCCTGACATTATGGATGCTGTAAATCATGTTATGGAGCAAAGAGGTTCCGAGCCAAGAGTTGGAGTTAGAGATGGTGTTGACAATTTCATGAGGCAGAGAATGGCTGGAAGCTACACAAACTTTGATGTCAGAAGGAGGTTTGGTAGCACCCCTCTTCCTGATCAGACTTGGGGGATCTATACATCTGGTCCTTATCTTATATTTCATGGTCAACCTCCAGGGTTCACTATCTCTAACAACAGTGGCTCAAGAAGTGGTTCTGGGCATGTTGATTTTGGTCACTACTTTCTTGGTCCTAGACTTGAAGGACTCATTGAGCAGCACATAACAAATGACCGGCTTGGTCCACCTCCTGCATCACGCTCTTCTATTGATGCAATGCCAACAATTAAGATCACAAATGAACACCTCCAATCTGATTCTCACTGTGCAGTTTGTAAGGAAAGGTTTGAACTGAGTTCTGAGGCCAGGAAAATGCCATGTAGCCACATTTACCACTCAGATTGCATTGTTCCATGGTTGGTCCAGCACAATTCCTGTCCAGTTTGCCGTGTTGAGCTGCCATCTCAAGGACACTCCAGTTCCCGAAAAGCAGAGTGA 777 0.4543 MSSGTTYWCYTCRQPIWLERRDAICPYCDGGFVQELYELLRAVSRQQGFSSQREDFHQVPDIMDAVNHVMEQRGSEPRVGVRDGVDNFMRQRMAGSYTNFDVRRRFGSTPLPDQTWGIYTSGPYLIFHGQPPGFTISNNSGSRSGSGHVDFGHYFLGPRLEGLIEQHITNDRLGPPPASRSSIDAMPTIKITNEHLQSDSHCAVCKERFELSSEARKMPCSHIYHSDCIVPWLVQHNSCPVCRVELPSQGHSSSRKAE 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13578g00001 258 SMART ring_2 202 242 IPR001841 -
Vium13578g00001 258 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Vium13578g00001 258 FunFam E3 ubiquitin-protein ligase RING1-like 165 249 - -
Vium13578g00001 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 88 247 - -
Vium13578g00001 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
Vium13578g00001 258 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
Vium13578g00001 258 SUPERFAMILY RING/U-box 182 249 - -
Vium13578g00001 258 Pfam Ring finger domain 201 243 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13578g00001 Vium-Chr13578 402 2588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13578g00001 172 246 C3H Transcription Factor Family AT1G68180 52.000 3.48e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13578g00001 K11982 - var:108344709 536.569