Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13572g00001 ATGGGGACTCAAACGATGGGATCTCAAGGTGGTGATAAAGACAGTAATGGAAAACAGTCACAAGTCCAGCCCCTGGTGCGGCAAAACTCAATGTACAGTCTCACACTGGATGAGGTTCAGAATCAATTGGGTGATCTAGGGAAGCCGCTTACTAGTATGAACCTTGATGAGCTTCTGAAAAATGTGTGGACTGTTGAGGCAGGCCAGACAGCTGGTATGGACAATGAAAGCGCGGCACAAGCTGGTCAAGCTGCTCTGCAGCGTCAGGCTAGTCTGTCACTGACTGGTGCACTGAGCAAGAAGACGGTGGACGAGGTTTGGAGAGATATCCAACAAAACAAAGCCATTGAAGAGAAGAGGTTCCGTGACGAAAAACAGCCTACTTTGGGAGAAATGACATTGGAGGACTTCTTGGTGAAAGCAGGAGTTGTTACAGAAACATCTTCTAACCCAAAGAATGCTGGTACTGTATCCACACCGGTACCAGTACCAGTGCCAGTACCAGTGCCAGTACCGATGGATTCAAACGTGGCAGTAGCACCACAGTTTCCTTCACAAGGACAGTGGATACAATATCCACCAGTGCAATATCAGCATCCACAGCAAAGTTTGATGCAGATTTATATGCCTGGTCAGGGTATGGCACAACCAATACACATGGGGCCTGGAGCTTCATTGGATGTTTCGTTTGCAGATGGCCAGGTTGCAATGCCGTCTCCTATGATGGCAACAATGTCGGATTCACATACTCCTGGAAGAAAAAGGACCACTCCCGAGGACATGATGGAGAAAACTGTTGAGAGGAGACAGAAAAGGATGATAAAAAATCGTGAATCTGCTGCTCGATCAAGAGCAAGGAAACAGGCATACACAAATGAATTGGAGAATAAAGTCTCCCGTCTAGAAGAGGAAAATGAAATGCTGAGGAAACGACAGGAGATAGAGAAGATGTTGCCAAGTACACCACCTCCTGAGCCTAAGTATCAACTTCGCCGAATAGGATCAGCTCCTTTCTGA 1017 0.47 MGTQTMGSQGGDKDSNGKQSQVQPLVRQNSMYSLTLDEVQNQLGDLGKPLTSMNLDELLKNVWTVEAGQTAGMDNESAAQAGQAALQRQASLSLTGALSKKTVDEVWRDIQQNKAIEEKRFRDEKQPTLGEMTLEDFLVKAGVVTETSSNPKNAGTVSTPVPVPVPVPVPVPMDSNVAVAPQFPSQGQWIQYPPVQYQHPQQSLMQIYMPGQGMAQPIHMGPGASLDVSFADGQVAMPSPMMATMSDSHTPGRKRTTPEDMMEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENEMLRKRQEIEKMLPSTPPPEPKYQLRRIGSAPF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13572g00001 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 266 311 IPR004827 GO:0003700|GO:0006355
Vium13572g00001 338 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 337 IPR043452 GO:0003700|GO:0045893
Vium13572g00001 338 MobiDBLite consensus disorder prediction 252 316 - -
Vium13572g00001 338 MobiDBLite consensus disorder prediction 1 29 - -
Vium13572g00001 338 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 266 318 - -
Vium13572g00001 338 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 271 286 IPR004827 GO:0003700|GO:0006355
Vium13572g00001 338 Pfam bZIP transcription factor 268 312 IPR004827 GO:0003700|GO:0006355
Vium13572g00001 338 CDD bZIP_plant_BZIP46 268 313 - -
Vium13572g00001 338 MobiDBLite consensus disorder prediction 242 338 - -
Vium13572g00001 338 Gene3D - 266 319 - -
Vium13572g00001 338 SMART brlzneu 264 332 IPR004827 GO:0003700|GO:0006355
Vium13572g00001 338 Coils Coil 284 311 - -
Vium13572g00001 338 SUPERFAMILY Leucine zipper domain 268 313 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13572g00001 Vium-Chr13572 23358 28231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13572g00001 18 338 bZIP Transcription Factor Family AT3G56850 54.658 3.84e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium13572g00001 bZIP_1 1.2e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13572g00001 K14432 - gmx:100101875 489.189