Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13570g00007 ATGGAAGAAGATCAAGAAGTGAAGCACTCGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTAGGAGGTCACATGAGGTCACACGTCACCAATGTTTCATCCGAGACAGAGAAAGTTTCGTCTTTCAACAACAACAATGGTGGAGATAGAGATAGAGATAGAGAGACGGGAATAATGGGTTCTGAAGGGGGAACTAGCAATGGAGGGTATGGTCTCAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGAATTCCGTTGATGACACTTTGTTGGTGTTGGACAAGTTGTGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTATCCCAGAACAACAGCAGCTTGATGGAGGATCAAGATTCGTGGACAGAAAATACCAATGCTAGCCAGAAGATGGTGTCGGATGATAGCCACTCCGACAATGAAGCCACTGCTCCAAACCGTAGGAGAAGATCCAGGAGGAGAAGGACAAGGTACGTGGCTCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGGCAGAGCAGGAGCAGGAAGAGGTTGCCATGAGTTTGATGATGCTTAGCAGGGATGTTAGTCCTTGGTGTGGTCTCAGTTCTGTGAACTCATTTCATTTTGAATCTCCTTTGGTTCCAACCAATTTAGATTCCAAGGCTGAAGGCAAGAGGGTTGTCTCCAATGATTCTGAAAATAAGGTTACCAAACCAAAGGATATGAAGTGGGATTTTGGCAATTTGGATGCTTCATATCTCAACTCCAAAGGAAAAATAAGCTCAGAACTTGATAAGAAGGCCGAGCTTGATACTGATTCTGCATTTGAGGACAATGGAATAGATGATAATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTCTGAATTGAAGGCTAGTTCTTCAAAGAGTTGGGTGAAGAACAAGTCCCCAGAAGTTGAATTGAGCAAAATCTCAAACAAGAGAGGAAAATTTGAGTGTGCTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTCGGAGGTCACAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGACTTGGAAGCAGACCTCTCCCCTGATCCAACAACAGAAAGTAAGCTCCTGAAGAAGGAATATGTGGAAGAACATGAAATGGTTACTGTTACTACTACTACTACTACTACTGGTTTTGACAATGAGGAAGAGAGAGAGAGAGATTTGAAAAAGGGGAAAGTTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGACAAGCCTTGGGTGGTCACAAGAGATCTCATCACTTGCCTAATGGGTCTGATATTGCTAGAAACTGTCAAAGTCAAAGAGTTGTACTTGGGAGAGAAGACCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGCCATGCTGAGCCTTACAAACCTTGGTGGGTAGTAGGAGGCAGCAGCCACAAGCAAGAGGCACTGATAGGCCTCATTTCTAACTAA 1596 0.4398 MEEDQEVKHSCKFCSKSFPCGRSLGGHMRSHVTNVSSETEKVSSFNNNNGGDRDRDRETGIMGSEGGTSNGGYGLRENPKKTWRFTNSVDDTLLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSSLMEDQDSWTENTNASQKMVSDDSHSDNEATAPNRRRRSRRRRTRYVAPSTSSVSFVSEAEQEQEEVAMSLMMLSRDVSPWCGLSSVNSFHFESPLVPTNLDSKAEGKRVVSNDSENKVTKPKDMKWDFGNLDASYLNSKGKISSELDKKAELDTDSAFEDNGIDDNRNNKYTSIKAKYLDSELKASSSKSWVKNKSPEVELSKISNKRGKFECATCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTDLEADLSPDPTTESKLLKKEYVEEHEMVTVTTTTTTTGFDNEEERERDLKKGKVHECPICLKVFPSGQALGGHKRSHHLPNGSDIARNCQSQRVVLGREDPEIRDFFDLNLPASTEEEGNSHGHAEPYKPWWVVGGSSHKQEALIGLISN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13570g00007 531 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 513 - -
Vium13570g00007 531 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Vium13570g00007 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Vium13570g00007 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 341 368 IPR013087 -
Vium13570g00007 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 436 458 IPR013087 -
Vium13570g00007 531 Gene3D Classic Zinc Finger 1 124 - -
Vium13570g00007 531 Pfam C2H2-type zinc finger 341 365 - -
Vium13570g00007 531 Pfam C2H2-type zinc finger 9 31 - -
Vium13570g00007 531 Pfam C2H2-type zinc finger 100 121 - -
Vium13570g00007 531 Pfam C2H2-type zinc finger 435 459 - -
Vium13570g00007 531 ProSitePatterns Zinc finger C2H2 type domain signature. 343 363 IPR013087 -
Vium13570g00007 531 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Vium13570g00007 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Vium13570g00007 531 MobiDBLite consensus disorder prediction 35 49 - -
Vium13570g00007 531 MobiDBLite consensus disorder prediction 35 76 - -
Vium13570g00007 531 MobiDBLite consensus disorder prediction 128 176 - -
Vium13570g00007 531 SUPERFAMILY beta-beta-alpha zinc fingers 6 33 IPR036236 -
Vium13570g00007 531 MobiDBLite consensus disorder prediction 128 150 - -
Vium13570g00007 531 SUPERFAMILY beta-beta-alpha zinc fingers 99 363 IPR036236 -
Vium13570g00007 531 Coils Coil 522 531 - -
Vium13570g00007 531 SMART c2h2final6 9 31 IPR013087 -
Vium13570g00007 531 SMART c2h2final6 98 120 IPR013087 -
Vium13570g00007 531 SMART c2h2final6 436 458 IPR013087 -
Vium13570g00007 531 SMART c2h2final6 341 363 IPR013087 -
Vium13570g00007 531 Gene3D Classic Zinc Finger 338 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13570g00007 Vium-Chr13570 60256 62828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13570g00007 333 502 C2H2 Transcription Factor Family AT2G45120 39.306 1.77e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium13570g00007 zf-C2H2_6 4.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13570g00007 - - vra:106757260 981.474