Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13570g00005 ATGGGAAAATCACCAGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAGTCATCCAGATCAAATTTGTCAAAGGGAAGAGAGATTGTTAATAAAAGAGAAGCAGTGGTTACTTCCAACGTGTTGGAGAACGGTTTGGCCTTAGATCCAAACCACATTGAGATTGCTACAAATGAGGAGGACCTTGAACTGGAGAATGAAGAATCAGAAGTTACTTTACCTGAGAATCAAGAAAGAGACAGTATAGGACCTGTTGATCCAGATGCACCACATGATCCAGAGAAAATCAGGCAGGAGGTAGCAGCAATAAAGGCACAAGCTGCTTTCAGGGGTTACTTGGCTCGCAGGGCATTTAGGGCTCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACCTAGTTAGGAGACAAGCAGTTGTTACATTGTGCTGTATGTATGGGATTGTAAAGTTTCAAGCACTTGCCCGTGGACTAAAGATTAGGAAGTCTAATGTTGGATTTGAAATCCATCAGAAGTGCGGTCTGTTTAAGCCTCTGGAGGGCAAACTTGGTGAGCCGGTTGGTATTTCCACAAAAATTTCAAAGTTGTCTGCAAATACTTTCATCCGTAAGCTTCTTGCTTCATCAATTACAATAATGGCCCTGCGCTTGCAATATGTTAGTGGAGATCCAAATTCAGTGTTAAGCTGGTTGGAGCGCTGGTCATTATCTTGCTTTTGGAAACCAGTTTCCCAACCTAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGTAATATTTCAAATGGAGAAGTTCAAATTTCCAAGTCAAGACGCACTAACAGGAAGCTTCCTGTTGCTAGTTTTGAACCAGTCCCAGTGCAAACAAATCCTGAATTTGAGAAACCAAAACGTAATTTCAGGAAAACACCATACCAGGTGTCAGATCCAGAGCAAGACAATCCACAAAGTGAGCTTGAAAAGGTTAAACGTAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAGTGCTGTTCAGCCAGAAGTTGAGTCTGAGACTCTAAAGCAGCATTTGGAAATCACAACAGTCATTCCAGGTAATGCTGGTTCAGAACAAGTGATCGTTACTTCTGAGGAAAAGATCAAGAAGGAAGAAACTTGGACTATCTCCGATGTGCCTGATATTGAAATTACTCCAAGACCATCATCGGTTAACAAGGAAGTGTCTAACATTCCAAGTAATTATCAAGTGTCTGTAGAATCTGAACCCTTGTCAGAGACAATTACTAAAGATAGAAACACTTCTCGTGATGAAGTTCAAAATGGGCTAGGCAATCTACCAGAGGCTATTTTTAAAGAAGACAACTCCCTATTAACAAATGGAGATTTGAGTCATAAAGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAGCATCAAATTTGACGAAACAGGAGAATGGGGAAGATGGCTTAAAGAATAGTCCAAAAGTACCAAGTTATATGGCAGCAACTGAATCCGCCAAGGCAAAGTTGAGGGCACTAGGGTCAGGATCCCCGAGGTCTGGAGAAGATGGAACTGAGAAAAACAACAACACTGCTGGTTCTGGGAGACATTCTCTGCCATCTTCAACTGGCAACAAGATTAGTTCGCAATCACCTAGGACACAGAGATCAGTTCCAGCAGGTGGCAAAGGGAGTAAAAAAAGTGACAGATCAATAGCATCTTCTAAAGGAGGGAATGGTAAAGTAATTCAAGCAGAGTGGAGGAGGTGA 1767 0.4154 MGKSPGKWIKTVLFGKKSSRSNLSKGREIVNKREAVVTSNVLENGLALDPNHIEIATNEEDLELENEESEVTLPENQERDSIGPVDPDAPHDPEKIRQEVAAIKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKFQALARGLKIRKSNVGFEIHQKCGLFKPLEGKLGEPVGISTKISKLSANTFIRKLLASSITIMALRLQYVSGDPNSVLSWLERWSLSCFWKPVSQPKKIRDSKSQRKQGNISNGEVQISKSRRTNRKLPVASFEPVPVQTNPEFEKPKRNFRKTPYQVSDPEQDNPQSELEKVKRNLRKIHNPVVESAVQPEVESETLKQHLEITTVIPGNAGSEQVIVTSEEKIKKEETWTISDVPDIEITPRPSSVNKEVSNIPSNYQVSVESEPLSETITKDRNTSRDEVQNGLGNLPEAIFKEDNSLLTNGDLSHKDLTGNENQKPTRKASNLTKQENGEDGLKNSPKVPSYMAATESAKAKLRALGSGSPRSGEDGTEKNNNTAGSGRHSLPSSTGNKISSQSPRTQRSVPAGGKGSKKSDRSIASSKGGNGKVIQAEWRR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13570g00005 588 PANTHER IQ-DOMAIN 5-RELATED 1 547 - -
Vium13570g00005 588 SMART iq_5 97 119 IPR000048 GO:0005515
Vium13570g00005 588 SMART iq_5 120 141 IPR000048 GO:0005515
Vium13570g00005 588 Gene3D - 95 144 - -
Vium13570g00005 588 MobiDBLite consensus disorder prediction 457 588 - -
Vium13570g00005 588 Pfam IQ calmodulin-binding motif 101 119 IPR000048 GO:0005515
Vium13570g00005 588 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Vium13570g00005 588 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Vium13570g00005 588 MobiDBLite consensus disorder prediction 59 90 - -
Vium13570g00005 588 MobiDBLite consensus disorder prediction 410 437 - -
Vium13570g00005 588 MobiDBLite consensus disorder prediction 258 278 - -
Vium13570g00005 588 Pfam Protein of unknown function (DUF4005) 482 567 IPR025064 -
Vium13570g00005 588 MobiDBLite consensus disorder prediction 520 557 - -
Vium13570g00005 588 MobiDBLite consensus disorder prediction 251 321 - -
Vium13570g00005 588 MobiDBLite consensus disorder prediction 470 486 - -
Vium13570g00005 588 ProSiteProfiles IQ motif profile. 122 144 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13570g00005 Vium-Chr13570 36291 43519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13570g00005 1 588 IQD Protein Family AT1G74690 43.790 2.88e-123 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13570g00005 - - gmx:100786022 917.146