Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13570g00003 ATGAGGACCACCCTCACCGGTTTGCCATTGGTGTTGCAACAATTCAGAGCTCTGTTGAAGAAAAATTTGTTACTGTCATGGCGGAACAAGAGAGCGAGTCTTCTGCAATTGCTCTCTCCTCTCATATTCATTTTCCTCATCTTCGTCATCGACAAGGCGATTAAGGCTCAGACGTCGACCACCTCCGCCTACAAGACCGTCACCGACCCTCCCACCGAACCGTCTCCGCCCATAACTCCCTGTGAAGACAAGTTCTTCATCAAAGTCCCATGCTACGACTTCGTTTGGAGCGGTGACCAAAACCCCATCTTCCAAACCATCGTCACCCGCATCATGAACAACAACCCCGGCAGACCCATCCCTTCCTCCAAGGTGAAGTCGTTCAAGAACAAGACCGAAGTGGATGCGTGGCTGTTCAGCAACCCTATGACTTGTCCAGGGGCGCTTCATTTCTCGCAGCTAAACGACACCGTTATAAGCTACGGTCTTCAGACCAATTCCACCAGTCTTCAGTGGCGAGGCAAATATCAGGACCCTACTATGTCGTTTCAACTTCCTCTTCAGCTTGCCGCCGAGAGGGAAATTGCCAGACACCTTATTGGAGACCCGGGTTTCAGTTGGAATGTGTTTCTGAGGGAATTCGCTCACCCTTCCTTGACTCCTTTCTCTGCCGTGGGTACAATTGGTCCCGCGTTTTTCCTCGCCATTGCTATGTTTAATTTTGTTCTTCAGATAAGCTCTTTGGTGACGGAGAAAGAGCTTAAACTTCGCCAGTCAATGACAATGATGGGCCTTTACGACTTTGCTTACTGGTCGTCCTGGCTCATTTGGGAGACGGTTGTCACAATCCTATCTTCCCTCCTCATAGTACTCTTTGGAATGATGTTCCAGTTCAGTTTTTTCTTGAAAAACAGTTTCGCGGTCCTGTTTGTCTTTTTCTTCCTATTTGAACTTAATATGACTGGCTTGGCCTTCATGTTGTCTGCTTTCATTAAGAAGTCATCTTCGGCAACAACAATGGGATTCTCTATATTTATTGTGGGCTTTTTGACTCAGCTAGTGGTACAGGCAGGATTTCCTTACACGGATAGTTTTTCCAAAACTTTACGAGATTTGTGGTCGTTATTCCCACCCAATCCTTTTTCTCAAGGTATACAAGTGCTTTCAGATGCAGTTGCAACTTCCGAAGTCGATGGTGTTAGCTGGAGTAGACGAGGAGAATGCCTTCATACTGATGCAGACTGTGTGATAACTATTGATGATATTTATAAATGGCTTGCGGGTACATTCGTTCTCTGGTTTGTTCTGGCCATTTATTTTGACAATATAATCCCTAATGCATCGGGTGTGAGGAAGTCAGTATTCTACTTTCTAAATCCCAATTATTGGATTGGAAGGGGTCAGAGAGTGAAAGAGGGTGGGCTTTGTAGTTGTGTAGGTTCAAACCCACGTCAGGAAATAAGTACACCTGATGATGAAGATGTCCTTGATGAAGAAAACAAAGTGAAACAGCAACTAACAGAAGGTCTGGTTGATGCAAATATTGCTGTTCAAATACATGGCCTTGTGAAGACCTATGCCGGTACACGGAACATTGGTTGCTGCTGCAAATGTACAAAGACTGCTCCTTACACTGCTGTTAAGGGTCTGTGGGTAAACTTTGCAAAGGATCAGTTGTTTTGTCTTCTAGGACCCAATGGAGCTGGAAAAACCACAGCTATTAATTGTTTGACAGGGATAACTCCAGTAACTAGCGGAGATGCGTTGATTTATGGACATTCAATCAGAAGTTCTATTGGCATGTCAAACATTCGAAAGCTTATAGGAGTATGTCCACAGTTTGATATACTATGGGATGCACTGTCTGGCCAAGAACACCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCCGCTTCCATAAAATCAATTACCCAGACTTCATTAGCAGAGGTGAAACTCACGGATGCAGCCAAAGTGAGAGCTGGAAGTTACAGTGGAGGTATGAAGCGCCGTCTCAGTGTTGCAATTGCGCTTATTGGTGACCCTAAGTTAGTCATTTTGGATGAACCCACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAAAGAGGGCGTGCCATTGTTCTTACGACTCACTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGAATCATGGCAAAAGGAAGGCTTCGCTGCATTGGCACCTCAATCAGATTGAAATCACGCTTTGGTACTGGTTTTATTGCTAATATCAGCTTCTATGGAAACAATGAACGCAGTCCTACCAATGGTGATGCAATATCTACAGAGCATCGTGAGGAAGTGAAGAAATTCTTTAAGAATTGTTTAGATGTAGAGCCAAAAGAGGAGACCAATAACTTTATAACTTTTGTGATTCCCCATGACAGAGAGGCGCTCCTGACAAATTTCTTTTCAGAGCTCCAAGAGAGAGAAGAAGAATTTGGCATTTCTGACATCCAGCTTGGTCTTACAACTCTCGAAGAAGTTTTCTTGAATATTGCAAGACAAGCAGAGCTAGAAAACGCTACAGCTGAAGGGAGGCTAACAACCCTGACCTTAACATCTGGGGAATCTGTGCAGATTCCCGTAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAATCTATGGAAAACCCAACAGGGTTTATGGTAGAAGTTTACTGGGAGCAAGATGATACTGGGACCCTATGCATTGCTGGCCACTCGCAGAAGGTTCCTATTCCTCCTGGCGTTCAATTATCATCCTCACCTTCTGCAAGAAACCGTATATATTTAAGCCGGGCAGGACCAATTAATGGAATTGTGATTGATCCAAGTCAAGTTAGTCCAGGTGATTTTCAGCGATAA 2901 0.445 MRTTLTGLPLVLQQFRALLKKNLLLSWRNKRASLLQLLSPLIFIFLIFVIDKAIKAQTSTTSAYKTVTDPPTEPSPPITPCEDKFFIKVPCYDFVWSGDQNPIFQTIVTRIMNNNPGRPIPSSKVKSFKNKTEVDAWLFSNPMTCPGALHFSQLNDTVISYGLQTNSTSLQWRGKYQDPTMSFQLPLQLAAEREIARHLIGDPGFSWNVFLREFAHPSLTPFSAVGTIGPAFFLAIAMFNFVLQISSLVTEKELKLRQSMTMMGLYDFAYWSSWLIWETVVTILSSLLIVLFGMMFQFSFFLKNSFAVLFVFFFLFELNMTGLAFMLSAFIKKSSSATTMGFSIFIVGFLTQLVVQAGFPYTDSFSKTLRDLWSLFPPNPFSQGIQVLSDAVATSEVDGVSWSRRGECLHTDADCVITIDDIYKWLAGTFVLWFVLAIYFDNIIPNASGVRKSVFYFLNPNYWIGRGQRVKEGGLCSCVGSNPRQEISTPDDEDVLDEENKVKQQLTEGLVDANIAVQIHGLVKTYAGTRNIGCCCKCTKTAPYTAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTSGDALIYGHSIRSSIGMSNIRKLIGVCPQFDILWDALSGQEHLQLFATIKGLSPASIKSITQTSLAEVKLTDAAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNERSPTNGDAISTEHREEVKKFFKNCLDVEPKEETNNFITFVIPHDREALLTNFFSELQEREEEFGISDIQLGLTTLEEVFLNIARQAELENATAEGRLTTLTLTSGESVQIPVGARFVGIPGTESMENPTGFMVEVYWEQDDTGTLCIAGHSQKVPIPPGVQLSSSPSARNRIYLSRAGPINGIVIDPSQVSPGDFQR 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13570g00003 966 SMART AAA_5 556 740 IPR003593 GO:0016887
Vium13570g00003 966 FunFam ABC transporter A family member 2 507 771 - -
Vium13570g00003 966 Pfam ABC-2 family transporter protein 33 439 IPR013525 GO:0016020|GO:0140359
Vium13570g00003 966 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 745 IPR027417 -
Vium13570g00003 966 Pfam ABC transporter 550 692 IPR003439 GO:0005524
Vium13570g00003 966 ProSitePatterns ABC transporters family signature. 665 679 IPR017871 GO:0005524|GO:0016887
Vium13570g00003 966 CDD ABC_subfamily_A 517 751 - -
Vium13570g00003 966 Gene3D - 512 767 IPR027417 -
Vium13570g00003 966 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 517 763 IPR003439 GO:0005524
Vium13570g00003 966 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 492 857 IPR026082 GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13570g00003 Vium-Chr13570 23231 29901 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13570g00003 561 762 Calmodulin-binding Proteins AT2G36910 24.528 3.31e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13570g00003 - - gmx:100786538 1654.42