Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13570g00002 ATGGCAAACGAACCTGCGAGCTTCTGGACTCAAGCAAACGCTCTCCTTAGAAAGAATTTAACGTTTCAGAAGCGAAATGTTAAAACAAACGTTCGACTCATCATGTTCCCGTTCCTGCTGTGTCTGTTGCTGGTTCTGCTTCAACGCCTAGTGGATTCTCAATTGGATAAGGCAGAGAACAAGTGTGGGTGCGAGTGTGTGAGGAGAGAAGGGGACACGTGTGTGGAGGAGGAGTGCGGGATTGAGCATTCGGATTTGGACCAAGTGACAACCTGCGCCATTCCAAATCCTCCAGAATGGTCTCCTCTGTTGCAGGTGCCGGCTCCGCAGTACCGAGCTGTGAGAACGGACAATTTTCCCTTTTCCGATTATCCAAACGCCTCCTGCAGGAGGAATGGCTCCTGTCCTGTCACTATGCTCTTCACTGGGACTAATCAGTCTTTTGGAGAAATTATATCTGGGAATATGATCCCAAGTTCCTTCACTGCTATAAACAGCTCTGCTGTTATGGCTAGTTTGGCAGCAAATGTCGCTGGATCAGCCTCATATACAGAAAACACCAATTTTCTGGAACCTGCTTTCTTTTCGGATCAACCTATTTATTATCTTCAAAGTCAGTGCACGCAGAACTCTACATTTTCCATTTCTTTTGAGCTATCCGCAGCTATTAGCAGAGAACAAGAGTTAGTATGCGCCGAGGGCTTACGTTTATGGCGTAATAGTGCTTCTGAAGTGAACAATGAGCTATATAGAGGTTATCGGAAAAGTAACCTAGAGGAACAAATCCAAGAGATAGCTACAGGTTATGATTTTTTGAATTCAAATGGGAGAATGTTTAATGTCAGCATATGGTACAACTCCACCTACAAAAACGACACTGGTTCTTCTGAAATTGCATTGGCGCGTATTCCTCGTTCTGTTAATTTGGTATCAGACGCCTATCTGCAGTTTCTGTTGGGACCTGGTACCAAAATGTTTTTTGAGTTTGTAAAGGAAATGCCAAAACCTTCAACCCCAATTAAATTTGATTTGGCTTCTCTTTTGGGTGGTCTGTTCTTTACATGGGTTATCCTGCAACTTTTCCCTATTGCCTTGACATCGCTTGTATATGAGAAGCAACAAAGATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCGTATGGTTATTTTCTGGCCTTATCAATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCACTCGTAGGGTTGAATTTCTTCACAATGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAATTTACAAATTGCACTGGCTTTTTTATTGGCTTCCGTGTTTTCAAATGTTAAAACTGCTACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCGGGCTTTCTTTTCCAATTTTTTGTTCAAGACACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGCTGTATCCTGGGTTTGCTTTATATCGTGGGCTATATGAGTTTTCGCAATATTCCTTTAATGGTGACGCTTTGGGGACTGATGGTATGCGCTGGGGCGATCTGAGCGATAGCGAAAATGGCATGAAGGAGGTCTTAATTATAATGTTTGTGGAGTGGATTTTGGTGCTTTCCTTTGCCTATTATATCGATCAACTTTTGTCAACAGGAAGCAGAAAAAGTCCTCTTTTTTTCTTTAAAAGATTTCAGAAAAAGCCTCATTCATCTTTTCGGAAGCCTAGTATCCGAAGGCAGAAATCCAAGGTTTTTGTTCAGATGGAGAAACCTGATGTCGCTCAAGAGAGGGAGAAGGTGGAGCAACTGCTACTTGAACCGACCATCAATCAAGCAATTGTATGTGACGACCTGAGAAAGGTCTACCCGGGGAGAGATGGTAACCCTGAGAAACTTGCGGTCAGGGGGTTGTCCCTTGCTTTACCCCAAGGAGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGTACAGCATTTGTTGAAGGTCTTGACATAATAACTCATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAACATGATTTGCTGTGGGAATCTCTGACAGGAAGAGAGCATCTACTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTGACAGAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTTATGGAGGAGTTGCAGATAAAAAAGCTGGAAAGTACAGCGGAGGAATGAAAAGGAGGCTTAGTGTCGCAATTTCATTGATTGGAGATCCTAAGGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTCGTCAAGCGTGCAAAACAAGATCGTGCAATCATTCTTACCACACATTCCATGGAAGAGGCAGAAGTCCTATGCGATCGATTGGGAATATTTGTAGATGGAAGCTTGCAGTGCATAGGAAACCCAAAGGAGTTGAAAGGTAGGTATGGAGGAACCTACGTGTTCACAATGACAACATCTGTGGATGATGAAAAGGCTGTAGAGAATTTGGTGCGAAGGCTTTCCCCAAATGCTAACAAGATCTACCATATCTCTGGTACACAAAAGTTTGAGCTACCAAAGGAGGATGTTAAAATAGCAGATGTATTCAAAGCAGTTGAGACTGCAAAAAGAAGCTTCACCGTTTCAGCATGGGGTTTAGCTGACACCACATTGGAAGATGTCTTCATCAAAGTTGCACGTGCGGCTCAGCCATTTGACACCTTGTCATAG 2841 0.4231 MANEPASFWTQANALLRKNLTFQKRNVKTNVRLIMFPFLLCLLLVLLQRLVDSQLDKAENKCGCECVRREGDTCVEEECGIEHSDLDQVTTCAIPNPPEWSPLLQVPAPQYRAVRTDNFPFSDYPNASCRRNGSCPVTMLFTGTNQSFGEIISGNMIPSSFTAINSSAVMASLAANVAGSASYTENTNFLEPAFFSDQPIYYLQSQCTQNSTFSISFELSAAISREQELVCAEGLRLWRNSASEVNNELYRGYRKSNLEEQIQEIATGYDFLNSNGRMFNVSIWYNSTYKNDTGSSEIALARIPRSVNLVSDAYLQFLLGPGTKMFFEFVKEMPKPSTPIKFDLASLLGGLFFTWVILQLFPIALTSLVYEKQQRLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSLVGLNFFTMNDYSIQFVFYFIYINLQIALAFLLASVFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQYSFNGDALGTDGMRWGDLSDSENGMKEVLIIMFVEWILVLSFAYYIDQLLSTGSRKSPLFFFKRFQKKPHSSFRKPSIRRQKSKVFVQMEKPDVAQEREKVEQLLLEPTINQAIVCDDLRKVYPGRDGNPEKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVEGLDIITHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTEAVEESLKSVNLFYGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSVDDEKAVENLVRRLSPNANKIYHISGTQKFELPKEDVKIADVFKAVETAKRSFTVSAWGLADTTLEDVFIKVARAAQPFDTLS 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13570g00002 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 862 IPR027417 -
Vium13570g00002 946 FunFam ABC transporter A family member 7 613 889 - -
Vium13570g00002 946 Gene3D - 616 885 IPR027417 -
Vium13570g00002 946 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 593 940 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vium13570g00002 946 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 861 IPR003439 GO:0005524
Vium13570g00002 946 Pfam ABC transporter 646 790 IPR003439 GO:0005524
Vium13570g00002 946 SMART AAA_5 654 837 IPR003593 GO:0016887
Vium13570g00002 946 ProSitePatterns ABC transporters family signature. 763 777 IPR017871 GO:0005524|GO:0016887
Vium13570g00002 946 Pfam ABC-2 family transporter protein 215 554 IPR013525 GO:0016020|GO:0140359
Vium13570g00002 946 CDD ABC_subfamily_A 628 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13570g00002 Vium-Chr13570 131 12927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13570g00002 633 853 Calmodulin-binding Proteins AT2G36910 22.747 2.22e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13570g00002 - - gmx:100805474 1712.2