Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13570g00001 ATGGCAAACGAACCTGCGAGCTTCTGGACTCAAGCAAACGCTCTCCTTAGAAAGAATTTAACGTTTCAGAAGCGAAATGTTAAAACAAACGTTCGACTCATCATGTTCCCGTTCCTGCTGTGTCTGTTGCTGGTTCTGCTTCAACGCCTAGTGGATTCTCAATTGGATAAGGCAGAGAACAAGTGTGGGTGCGAGTGTGTGAGGAGAGAAGGGGACACGTGTGTGGAGGAGGAGTGCGGGATTGAGCATTCGGATTTGGACCAAGTGACAACCTGCGCCATTCCAAATCCTCCAGAATGGTCTCCTCTGTTGCAGGTGCCGGCTCCGCAGTACCGAGCTGTGAGAACGGACAATTTTCCCTTTTCCGATTATCCAAACGCCTCCTGCAGGAGGAATGGCTCCTGTCCTGTCACTATGCTCTTCACTGGGACTAATCAGTCTTTTGGAGAAATTATATCTGGGAATATGATCCCAAGTTCCTTCACTGCTATAAACAGCTCTGCTGTTATGGCTAGTTTGGCAGCAAATGTCGCTGGATCAGCCTCATATACAGAAAACACCAATTTTCTGGAACCTGCTTTCTTTTCGGATCAACCTATTTATTATCTTCAAAGTCAGTGCACGCAGAACTCTACATTTTCCATTTCTTTTGAGCTATCCGCAGCTATTAGCAGAGAACAAGAGTTAGTATGCGCCGAGGGCTTACGTTTATGGCGTAATAGTGCTTCTGAAGTGAACAATGAGCTATATAGAGGTTATCGGAAAAGTAACCTAGAGGAACAAATCCAAGAGATAGCTACAGGTTATGATTTTTTGAATTCAAATGGGAGAATGTTTAATGTCAGCATATGGTACAACTCCACCTACAAAAACGACACTGGTTCTTCTGAAATTGCATTGGCGCGTATTCCTCGTTCTGTTAATTTGGTATCAGACGCCTATCTGCAGTTTCTGTTGGGACCTGGTACCAAAATGTTTTTTGAGTTTGTAAAGGAAATGCCAAAACCTTCAACCCCAATTAAATTTGATTTGGCTTCTCTTTTGGGTGGTCTGTTCTTTACATGGGTTATCCTGCAACTTTTCCCTATTGCCTTGACATCGCTTGTATATGAGAAGCAACAAAGATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCGTATGGTTATTTTCTGGCCTTATCAATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCACTCGTAGGTAAGAATGCAACCAGTGTGACTATTTTCTTTCTGTCGTTTTTTCCGTTTCTCTTTGATACAACTGCGTGGTTTTTTTCAGGGTTGAATTTCTTCACAATGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAATTTACAAATTGCACTGGCTTTTTTATTGGCTTCCGTGTTTTCAAATGTTAAAACTGCTACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCGGGCTTTCTTTTCCAATTTTTTGTTCAAGACACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGCTGTATCCTGGGTTTGCTTTATATCGTGGGCTATATGAGTTTTCGCAATATTCCTTTAATGGTGACGCTTTGGGGACTGATGGTATGCGCTGGGGCGATCTGAGCGATAGCGAAAATGGCATGAAGGAGGTCTTAATTATAATGTTTGTGGAGTGGATTTTGGTGCTTTCCTTTGCCTATTATATCGATCAACTTTTGTCAACAGGAAGCAGAAAAAGTCCTCTTTTTTTCTTTAAAAGATTTCAGAAAAAGCCTCATTCATCTTTTCGGAAGCCTAGTATCCGAAGGCAGAAATCCAAGGTTTTTGTTCAGATGGAGAAACCTGATGTCGCTCAAGAGAGGGAGAAGGTGGAGCAACTGCTACTTGAACCGACCATCAATCAAGCAATTGTATGTGACGACCTGAGAAAGGTCTACCCGGGGAGAGATGGTAACCCTGAGAAACTTGCGGTCAGGGGGTTGTCCCTTGCTTTACCCCAAGGAGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGTACAGCATTTGTTGAAGGTCTTGACATAATAACTCATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAACATGATTTGCTGTGGGAATCTCTGACAGGAAGAGAGCATCTACTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTGACAGAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTTATGGAGGAGTTGCAGATAAAAAAGCTGGAAAGTACAGCGGAGGAATGAAAAGGAGGCTTAGTGTCGCAATTTCATTGATTGGAGATCCTAAGGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTCGTCAAGCGTGCAAAACAAGATCGTGCAATCATTCTTACCACACATTCCATGGAAGAGGCAGAAGTCCTATGCGATCGATTGGGAATATTTGTAGATGGAAGCTTGCAGTGCATAGGAAACCCAAAGGAGTTGAAAGGTAGGTATGGAGGAACCTACGTGTTCACAATGACAACATCTGTGGATGATGAAAAGGCTGTAGAGAATTTGGTGCGAAGGCTTTCCCCAAATGCTAACAAGATCTACCATATCTCTGGTACACAAAAGTTTGAGCTACCAAAGGAGGATGTTAAAATAGCAGATGTATTCAAAGCAGTTGAGACTGCAAAAAGAAGCTTCACCGTTTCAGCATGGGGTTTAGCTGACACCACATTGGAAGATGTCTTCATCAAAGTTGCACGTGCGGCTCAGCCATTTGACACCTTGTCATAG 2922 0.4216 MANEPASFWTQANALLRKNLTFQKRNVKTNVRLIMFPFLLCLLLVLLQRLVDSQLDKAENKCGCECVRREGDTCVEEECGIEHSDLDQVTTCAIPNPPEWSPLLQVPAPQYRAVRTDNFPFSDYPNASCRRNGSCPVTMLFTGTNQSFGEIISGNMIPSSFTAINSSAVMASLAANVAGSASYTENTNFLEPAFFSDQPIYYLQSQCTQNSTFSISFELSAAISREQELVCAEGLRLWRNSASEVNNELYRGYRKSNLEEQIQEIATGYDFLNSNGRMFNVSIWYNSTYKNDTGSSEIALARIPRSVNLVSDAYLQFLLGPGTKMFFEFVKEMPKPSTPIKFDLASLLGGLFFTWVILQLFPIALTSLVYEKQQRLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSLVGKNATSVTIFFLSFFPFLFDTTAWFFSGLNFFTMNDYSIQFVFYFIYINLQIALAFLLASVFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQYSFNGDALGTDGMRWGDLSDSENGMKEVLIIMFVEWILVLSFAYYIDQLLSTGSRKSPLFFFKRFQKKPHSSFRKPSIRRQKSKVFVQMEKPDVAQEREKVEQLLLEPTINQAIVCDDLRKVYPGRDGNPEKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVEGLDIITHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTEAVEESLKSVNLFYGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSVDDEKAVENLVRRLSPNANKIYHISGTQKFELPKEDVKIADVFKAVETAKRSFTVSAWGLADTTLEDVFIKVARAAQPFDTLS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13570g00001 973 ProSitePatterns ABC transporters family signature. 790 804 IPR017871 GO:0005524|GO:0016887
Vium13570g00001 973 FunFam ABC transporter A family member 7 640 916 - -
Vium13570g00001 973 CDD ABC_subfamily_A 655 876 - -
Vium13570g00001 973 Pfam ABC-2 family transporter protein 215 581 IPR013525 GO:0016020|GO:0140359
Vium13570g00001 973 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 651 888 IPR003439 GO:0005524
Vium13570g00001 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 889 IPR027417 -
Vium13570g00001 973 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 618 967 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vium13570g00001 973 Gene3D - 643 912 IPR027417 -
Vium13570g00001 973 SMART AAA_5 681 864 IPR003593 GO:0016887
Vium13570g00001 973 Pfam ABC transporter 673 817 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13570g00001 Vium-Chr13570 131 12942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13570g00001 660 880 Calmodulin-binding Proteins AT2G36910 22.747 1.84e-11 66.6