Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13556g00004 ATGTCAAACCTTCTCATCTCTTCCCTTCTTCTCACCACAAACCTTATCTTTCTAACCTCAGTTTCATCCACAGAGTTCATCTACAACACCAACTTCAACTCCACCAACACTCTTATCTATGGCAACGCCACTATTCAATCTTCCATTCTCACCCTTACCAATAGCTCCACCTTCTCTGTGGGCCGTGCTTTCTACCCTTTTAAGATCCCCACCAAATCTTCCAATTCTTCAACCCCTTTACCTTTCTCAACCTCCTTCATTTTCTCCATTGCTCCGTTCAAAGGCCTTCTCCCTGGCCATGGCTTTGTCTTCATATTCACACCTTCTGCGGGCACCATTGGGGTGAGTTCTGCTCAGCATCTGGGCCTCTTCAACTTAACCAACAATGGTGATCCCAACAACCATGTCTTTGGCATTGAGTTTGATGTGTTTGACAACCAAGAGTTCGATGACATCGATGAAAATCATGTGGGGGTGGACGTAAACTCTCTTGTTTCTTTTGCTTCCCATGCTGCTGGATTTTGGGGTGGGAACGATGGTGACAGGTTTGAGGATTTGAAGCTTAATAATGGTGAGAACTATCAAGTGTGGATTGACTATTTAGATTCCAGAGTTAATGTTACGATGGCTCTTGCAGGCCAAAAGAGACCCAAGAAGCCTTTGATTAGTGAACTTGTGGATCTCTCTGAAGTGCTTTTGGATGAAATGTATGTTGGATTTTGTGGGGCAACAGGGCAGCTAGTAGAGAGTCATAAGATTTTGGCTTGGAGCTTCAGTAACTCAAATGTTTCTATCGGTGATGCTTTAGTTACTACAAATCTGCCTTCATTTGTGCTTCCCAGAGAATCTATTCTTAGGTCAAAAGGTTTTGTTGTAGGGATCACTATAGGTGTTTTGTTTGTCATCGGTAGTGCAGTTGTAATGTTTGTGATTTTTCTCAGAAGAAAAAGGAGCAAAAGAAAGGAGGAGGAAGAAGACATTGAAGACTGGGAACTAGAGTATTGGCCACACCGTGTAAGATATGAGGACATTTATGCTGCAACTAAAGGATTTTCAGACCAAAATGTAATTGGGTTTGGAGGGAATGGAAAAGTGTATAAAGGGCTTCTCCAAGGAGTGCAAGTTGCAGTCAAAAGAATTCCTTATGACAGTAAACATGGAATGAGAGAGTTTTTGTCTGAGATTTCAAGTTTAGGCAGGATGAAGCATAGGAATGTGGTTCCATTGAGAGGTTGGTGTAAGAAGGAGAAAGGGAGCTTGATTTTAATCTATGACTATATGGAAAATGGAAGTTTAGATAAAAGAATATTTGATGGTGATGAGAACACAGTTTTTGGTTGGGAGGAGAGAGTGAAAGTGCTGAAGGATGTAGCTCATGGTATATTGTATTTGCATGATGGTTGGGAGGTTAAGGTGTTGCACAGAGACATCAAGTCAAGCAATGTGTTGCTTGATAAGGATATGAATGGAAGATTGGGGGATTTTGGACTTGCCACAATGCATCATCATGAGCAGATAGGTCACACATCACAAGTGATTGGAACTGTTGGTTTCATGGCACCAGAACTTGTTCATACAGGGAGAGCCTCAACTCAGAGTGATGTGTTCAGCTTTGGAGTGTTGGTTTTAGAGGTGGTGTGTGGGAGAAGGCCAAATGAGGAAAACAAGCCAACCTTGGTTGTTTGGTTGATGGGGCTAATGGAGAGAGGAGAAGAGTGA 1719 0.4235 MSNLLISSLLLTTNLIFLTSVSSTEFIYNTNFNSTNTLIYGNATIQSSILTLTNSSTFSVGRAFYPFKIPTKSSNSSTPLPFSTSFIFSIAPFKGLLPGHGFVFIFTPSAGTIGVSSAQHLGLFNLTNNGDPNNHVFGIEFDVFDNQEFDDIDENHVGVDVNSLVSFASHAAGFWGGNDGDRFEDLKLNNGENYQVWIDYLDSRVNVTMALAGQKRPKKPLISELVDLSEVLLDEMYVGFCGATGQLVESHKILAWSFSNSNVSIGDALVTTNLPSFVLPRESILRSKGFVVGITIGVLFVIGSAVVMFVIFLRRKRSKRKEEEEDIEDWELEYWPHRVRYEDIYAATKGFSDQNVIGFGGNGKVYKGLLQGVQVAVKRIPYDSKHGMREFLSEISSLGRMKHRNVVPLRGWCKKEKGSLILIYDYMENGSLDKRIFDGDENTVFGWEERVKVLKDVAHGILYLHDGWEVKVLHRDIKSSNVLLDKDMNGRLGDFGLATMHHHEQIGHTSQVIGTVGFMAPELVHTGRASTQSDVFSFGVLVLEVVCGRRPNEENKPTLVVWLMGLMERGEE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13556g00004 572 ProSiteProfiles Protein kinase domain profile. 351 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13556g00004 572 SMART serkin_6 351 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13556g00004 572 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 311 426 - -
Vium13556g00004 572 SUPERFAMILY Protein kinase-like (PK-like) 329 559 IPR011009 -
Vium13556g00004 572 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Vium13556g00004 572 ProSitePatterns Protein kinases ATP-binding region signature. 357 378 IPR017441 GO:0005524
Vium13556g00004 572 Gene3D - 22 271 - -
Vium13556g00004 572 Pfam Protein kinase domain 352 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13556g00004 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Vium13556g00004 572 Coils Coil 313 333 - -
Vium13556g00004 572 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
Vium13556g00004 572 Gene3D Transferase(Phosphotransferase) domain 1 427 571 - -
Vium13556g00004 572 PANTHER - 41 564 - -
Vium13556g00004 572 Gene3D Phosphorylase Kinase; domain 1 312 426 - -
Vium13556g00004 572 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 263 IPR013320 -
Vium13556g00004 572 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246
Vium13556g00004 572 FunFam Lectin-domain containing receptor kinase A4.3 427 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13556g00004 Vium-Chr13556 26664 31860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13556g00004 21 570 Receptor kinase-like Gene Family AT4G04960 61.913 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium13556g00004 Lectin_legB 5.2e-61 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13556g00004 - - gmx:100807059 959.518