Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13556g00003 ATGGGTTGCTTATGCTCTAAGAGTGCAGCTGTAGAGGACAGCAAGGTAGGAGTCACTAAGAAATTGCAATCGTATAGCACAAGGCCTTCAGAGTTGAATGTTTTGCGGTTGAATTCGACTAGGAGGGTTGATGAAGGTGGGGCTAAAGATGTGATAACAGACAGTGGTCATGTAAAAGGTTCATTGATTGACAAGAAGGCCAATGGTTCAGGGCAGTTGTATGTTGATCATGATGGGAAGAAGAAAACAGAGAAGCCTGAAGTGACTGTTGTGGATCATATTGGCCCTGGAAGAATTCCAAAGGCTATAGAAGGAGAGCAAGTTGCAGCTGGATGGCCAGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCTCGGAGAGCGAATAATTTTGAGAAGTTGGACAAAATTGGACAAGGAACTTATAGTACTGTTTATAAGGCAAGGGATGTGATTAACCGCAAGTTTGTTGCATTGAAAAAAGTACGCTTTGACAATCTTGATCCTGAGAGTGTGAAGTTTATGGCAAGGGAAATCCATGTTCTGCGTAGGCTTGACCATCCAAACATTATAAAATTGGAGGGCTTGGTAACGTCTCATATGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACACGATCTTACAGGACTTGCATCAAATCCTGAAATCAAGTTCTCTGAAGCACAGCTAAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTGCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGAATCTTAAAAATAGCTGATTTTGGTTTGGCAAGTTTTTTTGACCCCCACCACAGTGTTCCATTGACAAGCCGAGTAGTAACTCTATGGTATAGACCACCAGAACTTTTACTTGGAGCAAATCATTATGGGGTTGCAGTGGATTTGTGGAGCACTGGTTGCATACTGGGTGAACTATATACTGGAAGGCCCATTTTGCCAGGAAAAACAGAGGTTGAGCAATTGCATCGAATTTTTAAACTTTGCGGCTCACCATCTGATGAGTATTGGCTTAAATTGCGGCTGTCACATTCAACAGTATTCCGGCCACCACACCATTATAGACGATGTGTTACTGAGACATTTAAGGACTACCCATCTACTGCTGTAAAGCTTATAGAGACCCTGCTTTCAGTAGAGCCGGCACAACGAGGAACTGCAGCAGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAGCCTGTGCCTTGTGATCCATCAAGTTTACCAAAATATGCTCCCAGCAAGGAAATTGATGCTAAGTTACGAGATGAAGCCAGAAGGCAAGGAGCTGGTGGAGGTAGGGACCAAAAAGTTGCCTTGGGAGTTAGACAAGAAAAAGGGCATAGGACTAGTGTCACAGTAAAAGACAATGCCGACCCAGCTGCATCAGTACAGGTACTCTGA 1473 0.4338 MGCLCSKSAAVEDSKVGVTKKLQSYSTRPSELNVLRLNSTRRVDEGGAKDVITDSGHVKGSLIDKKANGSGQLYVDHDGKKKTEKPEVTVVDHIGPGRIPKAIEGEQVAAGWPAWLSSVAGEAIKGWIPRRANNFEKLDKIGQGTYSTVYKARDVINRKFVALKKVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLEGLVTSHMSRSLYLVFEYMEHDLTGLASNPEIKFSEAQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSDEYWLKLRLSHSTVFRPPHHYRRCVTETFKDYPSTAVKLIETLLSVEPAQRGTAAAALKSEFFTSEPVPCDPSSLPKYAPSKEIDAKLRDEARRQGAGGGRDQKVALGVRQEKGHRTSVTVKDNADPAASVQVL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13556g00003 490 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Vium13556g00003 490 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13556g00003 490 MobiDBLite consensus disorder prediction 462 476 - -
Vium13556g00003 490 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Vium13556g00003 490 Gene3D Transferase(Phosphotransferase) domain 1 218 456 - -
Vium13556g00003 490 CDD STKc_CDK9_like 135 419 - -
Vium13556g00003 490 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Vium13556g00003 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vium13556g00003 490 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13556g00003 490 FunFam probable serine/threonine-protein kinase At1g54610 218 458 - -
Vium13556g00003 490 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13556g00003 490 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Vium13556g00003 490 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Vium13556g00003 490 MobiDBLite consensus disorder prediction 447 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13556g00003 Vium-Chr13556 17490 23371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13556g00003 127 461 Core Cell Cycle Gene Families AT5G10270 48.148 2.39e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium13556g00003 Pkinase 6.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13556g00003 - - gmx:100814156 882.093