Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13544g00001 ATGCCGGAGATCGAGCAGGTGGCGATGGAGGACACTGCCTTGTTCGGAAAGTACGAGCTCGGGCGCGTTATCGGGTGCGGCGCCTTCGCGAAGGTGCACTATGCGCGCAACGTGCAGACGGGACAGAGCGTGGCCGTGAAAATCATCAACAAGAAGAAGATACACGGAACGGGTCTCGCCGGAAACGTGAAGCGTGAAATCACTATCATGAGCAGGCTCCACCACCCCAACATCGTGCGCCTCCACGAGGTTCTCGCTACCAAAAACAAAATTTTCTTCATCATGGACTTCGTCCGCGGCGGAGAGCTCTTCGGGAAGATCTCGAAGGGTCGCTTCTCGGAGGATCTCAGCCGGAAGTACTTCCACCAGCTCATCTCCGCCGTCGGCTACTGCCACTCGCGCGGTGTCTTCCACCGCGACCTCAAGCCCGAGAACCTCCTCCTCGATGAGAACGGCGATTTACGGGTCACCGATTTCGGGTTGAGTGCCGTCAGGGACCAGATCCGACCCGACGGGTTGCTCCACACGCTTTGCGGAACCCCTGCCTACGTGGCACCCGAGATTTTAAGCAAAAAAGGTTACGATGGTGCCAAGATTGATGTTTGGTCATGCGGGGTCGTTTTGTTCGTTCTCTCAGCGGGTTACTTACCGTTTAACGATCCGAACTTGATGGTAATGTATAAGAAGATTTACAAGGGAGAGTTCCGGTGCCCGCGGTGGATGTCCCCGGAGCTCCGGCGCTTTTTGGCGAAGCTGCTGGACACCAACCCGGAAACGAGGATTACGGTGGACGGCATGCTCCGTGACCCGTGGTTCAAAAAAGGGTACAAAGAGATCAAATTTCACGAGGAGGATTACGTGTCTGGGTCGGGTATCGGGTACGGGCCGAAAGACGAGAGGATAATGAATTTGAACGCTTTTGACATTATAAGTTTCTCTGCCGGTTTGGATTTGTCGGGGCTGTTCGGGGACGCCGGCGAGGGTGACCGGTTGGTTACGCAGGAGTCGCCGGAAAAGGTTCTGGAGATGGCGGAGGAGGTGGGGGCGGCGGCGGATATGACCGTGCGGTGGAAGAAGGAGTGCGGGGTGGAGTTAGAAGAGTTCAATGGAAGGTTCGGGTTTGAGGTGGAGGTTTACCGGCTGACGGCGGAGCTGACGGTTGTGGAAGCCCGGAAGAGGTGCGGCGACGGCGTGACGTTTAAAAGCGTTTGGGAGGAGAAGTTGAAGCCTTTGTTGCTTGGAGGTGCGACGACGTCGTATAACAGCGAAGATGAAGAACAAATAGATGAACAGCAAAATCAAGAACTACAACAACCTGAGTCGCAGCAGGTTGCCGGTGACTGA 1344 0.5573 MPEIEQVAMEDTALFGKYELGRVIGCGAFAKVHYARNVQTGQSVAVKIINKKKIHGTGLAGNVKREITIMSRLHHPNIVRLHEVLATKNKIFFIMDFVRGGELFGKISKGRFSEDLSRKYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGDLRVTDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILSKKGYDGAKIDVWSCGVVLFVLSAGYLPFNDPNLMVMYKKIYKGEFRCPRWMSPELRRFLAKLLDTNPETRITVDGMLRDPWFKKGYKEIKFHEEDYVSGSGIGYGPKDERIMNLNAFDIISFSAGLDLSGLFGDAGEGDRLVTQESPEKVLEMAEEVGAAADMTVRWKKECGVELEEFNGRFGFEVEVYRLTAELTVVEARKRCGDGVTFKSVWEEKLKPLLLGGATTSYNSEDEEQIDEQQNQELQQPESQQVAGD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13544g00001 447 Gene3D Kinase associated domain 1, KA1 300 414 - -
Vium13544g00001 447 Gene3D Transferase(Phosphotransferase) domain 1 8 294 - -
Vium13544g00001 447 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Vium13544g00001 447 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13544g00001 447 MobiDBLite consensus disorder prediction 432 447 - -
Vium13544g00001 447 CDD CIPK_C 305 412 - -
Vium13544g00001 447 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 406 - -
Vium13544g00001 447 Pfam NAF domain 303 356 IPR004041 GO:0007165
Vium13544g00001 447 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vium13544g00001 447 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Vium13544g00001 447 MobiDBLite consensus disorder prediction 415 447 - -
Vium13544g00001 447 ProSiteProfiles NAF domain profile. 299 323 IPR018451 GO:0007165
Vium13544g00001 447 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13544g00001 447 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium13544g00001 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vium13544g00001 447 FunFam Non-specific serine/threonine protein kinase 8 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13544g00001 Vium-Chr13544 7581 10289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13544g00001 1 413 CBL-interacting serine-threonine protein kinases AT2G30360 64.269 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium13544g00001 Pkinase 2.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13544g00001 - - gsj:114377188 743.421