Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13542g00001 ATGGACTCACCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAAAATGTGAAGGTTGATCCCATGGATCCAGTGAGTGCGTATATACACATTTCTCAGGTTGCCCTTGGAGAGGCGAAAAAGGAAAAGGCAAATGAACCTGTGGTTGTGTACTTGAAAGTTGGTGATCAGAAGATTGTTTTGGGAACCCTTAAAAAGGATGATATCCCTCACCTTTCGTTGGATTTGGTTCTCGACTCTGATTCTGAGCTTTCGCACTCTTCGAAAAGTGCCAGTGTATTTTTTTGTGGATACAAAGTTCTGACGGACGACGGTAACATTTCTGACTTTTCTGATAGTGAAGAGGAGGAGGAGGCTCTTCCCTTGAAAGGTCAAGATAATGGTAAATTCTTCCTCTCCTGTAACAAAAAGCTGAAGGAGGGGCAAGGTTACGCAATCCCCTCTAAACCTGCTTCCGTGAAAGGTGCATCTGTAAAACAAATAAAGACTGTTGATCCAAAGAAAGAGGATGATTCTGATTCTGACGAATCTGACGATGAGCTTACTGGTAATGATGAATCTGATTCTGACGAGATGGATGATGGTAGCGATAGTGATGAGGGTGAAAGTGAGGAAGAGACCCCTGCGAAGAAGGTAAGATATTTATTTCTGCTGTAA 660 0.4303 MDSPMEFWGVEVKVGQNVKVDPMDPVSAYIHISQVALGEAKKEKANEPVVVYLKVGDQKIVLGTLKKDDIPHLSLDLVLDSDSELSHSSKSASVFFCGYKVLTDDGNISDFSDSEEEEEALPLKGQDNGKFFLSCNKKLKEGQGYAIPSKPASVKGASVKQIKTVDPKKEDDSDSDESDDELTGNDESDSDEMDDGSDSDEEXESEEETPAKKVRYLFLL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13542g00001 220 MobiDBLite consensus disorder prediction 172 205 - -
Vium13542g00001 220 FunFam Histone deacetylase HDT1 5 105 - -
Vium13542g00001 220 Gene3D Nucleoplasmin core domain 2 107 - -
Vium13542g00001 220 MobiDBLite consensus disorder prediction 146 220 - -
Vium13542g00001 220 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13542g00001 Vium-Chr13542 939 2810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13542g00001 5 117 C2H2 Transcription Factor Family AT5G03740 46.018 6.98e-26 100