Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13541g00001 ATGCAAGTTCTTAGTTACATTTCTTTCGTTGTAACATTCTGTTCTCTGCTCCTAAACCCTAGCCATGGTCTCAATCTCAAATTATTTAATATATCCAAATTTCAGAAAGATGATCAATGGAATGTAGCAGCAGCTACATGGTACGGAGAACCAGAGGGTGCTGGATCTGATGGGGGTGCTTGTGGATATGCTGACAGTGTGCAGAAACCTCCACTCTCTAAAATGATATCAGCTGGAGGCTCTTCTCTCTTTAGGGGAGGCAGAGGATGTGGAGCTTGTTATCAGGTGAAATGCAGAGAAAGCACAGCTTGTTCAGGAAATCCAGTGAGTTTGATGATAACTGATGAATGCCCTGGCTGTCACTCAGCATCAGTCCATTTTGATCTGAGTGGCACTGTATTTGGTTCCATGGCAACTCCAGGCAAAGAAAATAGTCTTCGTAACGTTGGACAACTTCAAATTCTATACAGAAGGGTTGCATGCTCCTTTGGGAACTCCATAGCCTTTAGCGTGGACAAAGGAGCCAACCCATACTATTTTGCAACTGCAATAGAATATGAAAATGGGGATGGTGACCTTGTGGAGGTTCAGCTGAAGCAAGCTAATTCTGACACGTGGCTTCCGATGCAACGTTCATGGGGTTCAAGGTGGTCTTTGAACTTTGGTTCAAGGATGCAACCACCGTTCTCCATTAAGCTCACTGAAGATGGCAACAATAAAAGGAACACCATTGTGGCTGAAAATGTTATTCCATCTGGCTGGAAAGCTGGCCTTGTTTATCGATCTGTTGTTAATTTTTAA 801 0.4345 MQVLSYISFVVTFCSLLLNPSHGLNLKLFNISKFQKDDQWNVAAATWYGEPEGAGSDGGACGYADSVQKPPLSKMISAGGSSLFRGGRGCGACYQVKCRESTACSGNPVSLMITDECPGCHSASVHFDLSGTVFGSMATPGKENSLRNVGQLQILYRRVACSFGNSIAFSVDKGANPYYFATAIEYENGDGDLVEVQLKQANSDTWLPMQRSWGSRWSLNFGSRMQPPFSIKLTEDGNNKRNTIVAENVIPSGWKAGLVYRSVVNF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13541g00001 266 Pfam Lytic transglycolase 77 142 IPR009009 -
Vium13541g00001 266 SUPERFAMILY PHL pollen allergen 166 262 IPR036749 -
Vium13541g00001 266 SMART dpbb_1 76 156 IPR007112 -
Vium13541g00001 266 CDD DPBB_EXPB_N 40 161 - -
Vium13541g00001 266 SUPERFAMILY Barwin-like endoglucanases 36 163 IPR036908 -
Vium13541g00001 266 Gene3D - 27 162 IPR036908 -
Vium13541g00001 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 262 IPR007117 -
Vium13541g00001 266 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Vium13541g00001 266 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Vium13541g00001 266 PRINTS Major pollen allergen Lol pI signature 138 153 IPR005795 GO:0005576|GO:0019953
Vium13541g00001 266 PRINTS Major pollen allergen Lol pI signature 98 108 IPR005795 GO:0005576|GO:0019953
Vium13541g00001 266 PRINTS Major pollen allergen Lol pI signature 238 255 IPR005795 GO:0005576|GO:0019953
Vium13541g00001 266 PRINTS Major pollen allergen Lol pI signature 78 89 IPR005795 GO:0005576|GO:0019953
Vium13541g00001 266 Gene3D - 163 266 IPR036749 -
Vium13541g00001 266 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Vium13541g00001 266 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Vium13541g00001 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Vium13541g00001 266 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Vium13541g00001 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Vium13541g00001 266 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Vium13541g00001 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 166 IPR007112 -
Vium13541g00001 266 PANTHER EXPANSIN-B3 17 266 - -
Vium13541g00001 266 Pfam Expansin C-terminal domain 167 251 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13541g00001 Vium-Chr13541 3147 5205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13541g00001 19 266 Expansin Gene Family AT1G65680 54.183 8.29e-99 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13541g00001 - - var:108346495 551.592