Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13538g00001 ATGGTTACTCCTGTCGTTCGACGCATTTCAGAATGCTTCGTCAAACCGCATGGTTTAACCCAAGTTACAAACCAAATATGCAATTTAACACCTTGGGATATTTCTATGTTGTCTGTGCACTATATCCAAAAGGGTCTTCTCTTCAAGAAGCCTGAAACCCATGTTGATGAACACGATTTCGTGCAAAATCTGTTGGAGAAGCTCAAACACTCTCTTTCACTCACCCTTTTTTATTTCTATCCATTGTCTGGTCGCCTTGTTACCCACAAAACCCAAAACCCTCCCTCTTATACTGTTTCTGTTGATTGCAAAAACAGTGATGGAGCTAGATTCATTCATGCAACTCTTGATGTCACCATATCTGAACTACTCTCCCCAGTTGACACCCCATCCATTTTTCACTCATTCTTCGACCACCACAAAGCAGTCAACCATGACGGTCACACCATGCCGCTGTTGTCCATCCAAGTCACCGAATTGATCGATGGTGTTTTCATAGCTTGTTCCATGAATCACTCCGTCGGTGATGGCACTTCGTATTGGAATTTCTTCAATACATGGTCTCAGATCTTTGAAGCACAACCTCAAGCCCAAGAATATGATGTTCCCATTTTGCGCCAACCCATTCACAATCGCTGGTTTCCAAATGATTGCAGTCCACCAATCAATCTTCCTTTCAAACATCACGACGAGTTTATCAGGAGGTATGAAGCGCCCTTGCTGAGAGAGAGAATCTTCCACTTTTCAGCAGAGTCGATAGGAAAACTGAAAGCAAAGGCAAACTCAGAGTCCAACAGTAATACGACGAAAATCTCTTCGTTCCAGTCATTATCAGCACTTGTTTGGAGATCAATAATTCGAGCATGCTCCCTACCATATGAGCAAAAAACACGTTTCGACTTAACTGCAAACAATCGGTCAAGAATGGAGCCACCTCTGGCTCATGAATACTTTGGAAACTCGGTTGATAAGTTGAGTGCGGAAACGACAGTTGGGGAATTACTTGAGAATGATCTAGGATGGGCTGCAGGGAAGTTGCACCTTGCTGTTACAAGGCACAATGACAGAGAGGTGTTGCATTTACTCCAAGAGTGGTTACAGACTCCAGTGATCAAGCACACAAGTCAGCCTTTGGAGCCGTACGTTGTGTTGATAAGTAGCTCACCAAGGTTCAACATGTATGGGAGTGAGTTTGGAATGGGGAAAGCAGTGGCAGTGAGAAGTGGATATGCCAACAAATTTGATGGGAAGGTCACATCATTTCCAGGTCGTGAAGGAGGGGGAAGCATCGATTTGGAAATCTGCCTTTTACCACATATAATGACCTCTCTTGAATCAGACATAGAGTTTATAAATGCAGTTTCCTAG 1368 0.4357 MVTPVVRRISECFVKPHGLTQVTNQICNLTPWDISMLSVHYIQKGLLFKKPETHVDEHDFVQNLLEKLKHSLSLTLFYFYPLSGRLVTHKTQNPPSYTVSVDCKNSDGARFIHATLDVTISELLSPVDTPSIFHSFFDHHKAVNHDGHTMPLLSIQVTELIDGVFIACSMNHSVGDGTSYWNFFNTWSQIFEAQPQAQEYDVPILRQPIHNRWFPNDCSPPINLPFKHHDEFIRRYEAPLLRERIFHFSAESIGKLKAKANSESNSNTTKISSFQSLSALVWRSIIRACSLPYEQKTRFDLTANNRSRMEPPLAHEYFGNSVDKLSAETTVGELLENDLGWAAGKLHLAVTRHNDREVLHLLQEWLQTPVIKHTSQPLEPYVVLISSSPRFNMYGSEFGMGKAVAVRSGYANKFDGKVTSFPGREGGGSIDLEICLLPHIMTSLESDIEFINAVS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13538g00001 455 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 451 - -
Vium13538g00001 455 Gene3D - 8 222 IPR023213 -
Vium13538g00001 455 Gene3D - 234 447 IPR023213 -
Vium13538g00001 455 Pfam Transferase family 13 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13538g00001 Vium-Chr13538 25 1533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13538g00001 66 436 Monolignol Biosynthesis Gene Families AT5G48930 27.960 9.95e-32 124