Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium13529g00001 ATGGGTGAGTTTGGAAAAGCCTTTGAAAAATCTGGACCCCGAACTTTCTCAGGAGAAGAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCGTTCTTAATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCAACGTGGAAGATCTAATTCAAACTATAAAAGATAAATCGAGCGAAGTTTGTATAATAGGGATAAGTGGAGCTGGAGGATCTGGGAAAACCACCCTTGCCAAAGCCATCTACAATAAAATTCATGAAACATTCACGGAGAAAAGTTTCATCGAAAATATTGGACAAGTTAGTCGAAGAAGAGGGCATCATCGTTTACAAGAACAATTTCTTTTAGATGTCCTAAAACCAAAGGTGGAGATACCTAGTGTTGATATGGGAACAAGAATGATTCGGGAAAGACTTACTGGGAAAAGAGTGTTAATTGTACTTGACGATGTGACCGAGAATTTTACATTGTTAGATCTATGGGGATGCCGTGAATGGTTCGGTGGAGGAACAGTAATAATCATTACAACAAGAGATGTACGTCTACTCAATGTTCTCGAAGTTGACCATGTATATGAAGTGGAGGAAATGAATGAGATTGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAAGGAAGCAAATCCACCTGAAGATTTCCTTGAACTCTCAAAACAAGTAGTCACTTACTGTGGAGCACTACCTCTAGCTCTTGAAGTCATTGGAAATTGTTTATTTAAAAAGACAAAAGAAGAATGGAATAGTGTAATGTTAAAATTAGAGAAAACTCCCCTGTATAATGTTCGACAGAAATTGGAAATAAGCTTTGACGGATTACGGAATCAAATTGAAAAAGATTTATTCCTTGATATATGTTGTTCCTTTGTTGGTGAGGGCAGAGACTATGTTACGAAGATGCTAAATGGATGCGGAGTAGACGCTGACAGTGGAATAAGAGTTCTCATAGAACTTAGTCTCATAAAAGTTAAAAGGAAAAACAAACTTGGAATGCATCTTTTGTTACAAGAAATGGGAAGAAATATTATTAATGAAATTTATGAAAAGGAATTTCGGAGGGAGCGGCGACTGCGGTTTGACGATTCAGAATATGTATTGACAGATACTATTGAGGTGGTACAATCCAACAATGGTATTATTAAATCTTAA 1263 0.3777 MGEFGKAFEKSGPRTFSGEELEHGMSRWSHALTKAANFFGWDESNYRSDAELVDKIVKSVLNLPVLSATKFPVGLQSNVEDLIQTIKDKSSEVCIIGISGAGGSGKTTLAKAIYNKIHETFTEKSFIENIGQVSRRRGHHRLQEQFLLDVLKPKVEIPSVDMGTRMIRERLTGKRVLIVLDDVTENFTLLDLWGCREWFGGGTVIIITTRDVRLLNVLEVDHVYEVEEMNEIESLELFSWHAFKEANPPEDFLELSKQVVTYCGALPLALEVIGNCLFKKTKEEWNSVMLKLEKTPLYNVRQKLEISFDGLRNQIEKDLFLDICCSFVGEGRDYVTKMLNGCGVDADSGIRVLIELSLIKVKRKNKLGMHLLLQEMGRNIINEIYEKEFRRERRLRFDDSEYVLTDTIEVVQSNNGIIKS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium13529g00001 420 Gene3D - 1 58 IPR035897 -
Vium13529g00001 420 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 403 IPR044974 GO:0006952
Vium13529g00001 420 SUPERFAMILY "Winged helix" DNA-binding domain 303 382 IPR036390 -
Vium13529g00001 420 Pfam NB-ARC domain 77 309 IPR002182 GO:0043531
Vium13529g00001 420 PRINTS Disease resistance protein signature 170 184 - -
Vium13529g00001 420 PRINTS Disease resistance protein signature 95 110 - -
Vium13529g00001 420 PRINTS Disease resistance protein signature 263 277 - -
Vium13529g00001 420 Gene3D - 59 223 IPR027417 -
Vium13529g00001 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 323 IPR027417 -
Vium13529g00001 420 Gene3D - 228 312 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium13529g00001 Vium-Chr13529 1442 2809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium13529g00001 73 406 WRKY Transcription Factor Family AT5G45050 35.714 3.41e-53 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium13529g00001 - - vum:124822045 827.394