Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1351g00001 AACGATATTTTCAACCGTTATCATGGACGCCGTCAAGGGCCTCACCGTGAGGAGGAGGAAAAGTGGGTCCCTGTTATGAAGCTCGAGCGTCTGGTGAAGGAGGGCAGAATCCGAAGCTTGGAACAGATCTACCTCCACTCCCTTCCCATCAAGGAACACCAAATCATTGACACCCTCGTGGGTGCCACCCTCAATGACGAGGTCATGAAAATCACACCGGTTCAAAAACAGACCCGGGTCGGTCAACGAACCCGATTCAAGGCCTTCGTTGTTGTCGACGACGGTAATGGCCATGTCGGTCTCGATGTTATTCGCAACAAGGAGGTGGCCACCGTAATTCATGGCGCCATCATTCTGACCAAGCTTTCCGTTATCCTCGTTAGGAGAGGGTACTGGGGCAGCAAGATCGGAAAGCCCTACACCGTTTCGTGCAAGGTTACGGGAAAGTGCGGGTCCTTTATTGTGACAGATGTTCCTGCACCTCGGGGTTCGGGAATCGTGGTGGCTAGGGTTCCCAAGAAGGTGTTGCAGTTCGCTGGAATTGATGATGTCTTCACCTCCTCTAGAGGATCCACCAAGACCCTTGGCAACTTCGTTAAGGTTTGTGTTGTTTTCTCTTGCAAGTTAGTCTCTTTAATCTGA 642 0.514 NDIFNRYHGRRQGPHREEEEKWVPVMKLERLVKEGRIRSLEQIYLHSLPIKEHQIIDTLVGATLNDEVMKITPVQKQTRVGQRTRFKAFVVVDDGNGHVGLDVIRNKEVATVIHGAIILTKLSVILVRRGYWGSKIGKPYTVSCKVTGKCGSFIVTDVPAPRGSGIVVARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKVCVVFSCKLVSLI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1351g00001 213 NCBIfam 30S ribosomal protein S5 17 201 IPR005711 GO:0003735|GO:0006412|GO:0015935
Vium1351g00001 213 Gene3D - 127 212 IPR014721 -
Vium1351g00001 213 PANTHER RIBOSOMAL S SUBUNIT 15 200 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium1351g00001 213 FunFam 40S ribosomal protein S2 127 211 - -
Vium1351g00001 213 SUPERFAMILY Ribosomal protein S5 domain 2-like 141 201 IPR020568 -
Vium1351g00001 213 Pfam Ribosomal protein S5, N-terminal domain 64 127 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium1351g00001 213 Pfam Ribosomal protein S5, C-terminal domain 148 200 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vium1351g00001 213 Gene3D - 21 125 - -
Vium1351g00001 213 SUPERFAMILY dsRNA-binding domain-like 61 129 - -
Vium1351g00001 213 FunFam 40S ribosomal protein S2 21 126 - -
Vium1351g00001 213 ProSiteProfiles S5 double stranded RNA-binding domain profile. 64 127 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1351g00001 Vium-Chr1351 32424 33067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1351g00001 18 207 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 79.474 5.08e-104 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1351g00001 K02981 - gmx:100810363 328.176